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author Kyle Guinn <elyk03@gmail.com>2017-03-11 11:49:38 -0600
committer Willy Sudiarto Raharjo <willysr@slackbuilds.org>2017-03-18 06:59:49 +0700
commit152a8346eb06b9906555d4f89305fdeee2183d71 (patch)
tree92fb2e6eaed7c1a6fa895b8073145b53867bc206 /academic
parent7a3d19931123fd8661f08a90c1807914e9e406cf (diff)
downloadslackbuilds-152a8346eb06b9906555d4f89305fdeee2183d71.tar.gz
slackbuilds-152a8346eb06b9906555d4f89305fdeee2183d71.tar.xz
academic/qrupdate: Improve BLAS/LAPACK support + New maintainer.
Signed-off-by: Kyle Guinn <elyk03@gmail.com>
Diffstat (limited to 'academic')
-rw-r--r--academic/qrupdate/README12
-rw-r--r--academic/qrupdate/patches/atlas-lib-rename.diff21
-rw-r--r--academic/qrupdate/patches/autotoolize.diff504
-rw-r--r--academic/qrupdate/qrupdate.SlackBuild68
-rw-r--r--academic/qrupdate/qrupdate.info6
5 files changed, 589 insertions, 22 deletions
diff --git a/academic/qrupdate/README b/academic/qrupdate/README
index 7e66333237..e5979003d8 100644
--- a/academic/qrupdate/README
+++ b/academic/qrupdate/README
@@ -1,6 +1,12 @@
-qrupdate (A Fortran library for QR and Cholesky decompositions)
-
qrupdate is a Fortran library for fast updates of QR and Cholesky
decompositions.
-qrupdate is an optional dependency for the octave package.
+This requires a BLAS/LAPACK implementation. Choose one of these package sets:
+ * OpenBLAS (includes both a BLAS and a LAPACK implementation)
+ * atlas (includes both a BLAS and a LAPACK implementation)
+ * blas, lapack (the Netlib reference implementations)
+If more than one set is installed (assuming there are no packaging conflicts)
+then the auto-detection will use the first implementation from this list that
+it finds. If in doubt, choose the Netlib reference implementations; other
+packages that require a BLAS or LAPACK implementation may not build if they
+are not configured to detect/use alternate implementations.
diff --git a/academic/qrupdate/patches/atlas-lib-rename.diff b/academic/qrupdate/patches/atlas-lib-rename.diff
new file mode 100644
index 0000000000..4801036f46
--- /dev/null
+++ b/academic/qrupdate/patches/atlas-lib-rename.diff
@@ -0,0 +1,21 @@
+diff --git a/m4/ax_blas.m4 b/m4/ax_blas.m4
+--- a/m4/ax_blas.m4
++++ b/m4/ax_blas.m4
+@@ -116,13 +116,10 @@
+
+ # BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
+ if test $ax_blas_ok = no; then
+- AC_CHECK_LIB(atlas, ATL_xerbla,
+- [AC_CHECK_LIB(f77blas, $sgemm,
+- [AC_CHECK_LIB(cblas, cblas_dgemm,
+- [ax_blas_ok=yes
+- BLAS_LIBS="-lcblas -lf77blas -latlas"],
+- [], [-lf77blas -latlas])],
+- [], [-latlas])])
++ AC_CHECK_LIB(tatlas, $sgemm,
++ [ax_blas_ok=yes; BLAS_LIBS="-ltatlas"],
++ [AC_CHECK_LIB(satlas, $sgemm,
++ [ax_blas_ok=yes; BLAS_LIBS="-lsatlas"])])
+ fi
+
+ # BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
diff --git a/academic/qrupdate/patches/autotoolize.diff b/academic/qrupdate/patches/autotoolize.diff
new file mode 100644
index 0000000000..b8a86eb636
--- /dev/null
+++ b/academic/qrupdate/patches/autotoolize.diff
@@ -0,0 +1,504 @@
+diff --git a/Makefile.am b/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Makefile.am
+@@ -0,0 +1,3 @@
++SUBDIRS = src test
++
++pkgconfig_DATA = qrupdate.pc
+diff --git a/ax_blas.m4 b/ax_blas.m4
+new file mode 100644
+--- /dev/null
++++ b/ax_blas.m4
+@@ -0,0 +1,238 @@
++# ===========================================================================
++# https://www.gnu.org/software/autoconf-archive/ax_blas.html
++# ===========================================================================
++#
++# SYNOPSIS
++#
++# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++# This macro looks for a library that implements the BLAS linear-algebra
++# interface (see http://www.netlib.org/blas/). On success, it sets the
++# BLAS_LIBS output variable to hold the requisite library linkages.
++#
++# To link with BLAS, you should link with:
++#
++# $BLAS_LIBS $LIBS $FLIBS
++#
++# in that order. FLIBS is the output variable of the
++# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
++# sometimes necessary in order to link with F77 libraries. Users will also
++# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
++# reason.
++#
++# Many libraries are searched for, from ATLAS to CXML to ESSL. The user
++# may also use --with-blas=<lib> in order to use some specific BLAS
++# library <lib>. In order to link successfully, however, be aware that you
++# will probably need to use the same Fortran compiler (which can be set
++# via the F77 env. var.) as was used to compile the BLAS library.
++#
++# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is
++# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is
++# not found. If ACTION-IF-FOUND is not specified, the default action will
++# define HAVE_BLAS.
++#
++# LICENSE
++#
++# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu>
++#
++# This program is free software: you can redistribute it and/or modify it
++# under the terms of the GNU General Public License as published by the
++# Free Software Foundation, either version 3 of the License, or (at your
++# option) any later version.
++#
++# This program is distributed in the hope that it will be useful, but
++# WITHOUT ANY WARRANTY; without even the implied warranty of
++# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
++# Public License for more details.
++#
++# You should have received a copy of the GNU General Public License along
++# with this program. If not, see <https://www.gnu.org/licenses/>.
++#
++# As a special exception, the respective Autoconf Macro's copyright owner
++# gives unlimited permission to copy, distribute and modify the configure
++# scripts that are the output of Autoconf when processing the Macro. You
++# need not follow the terms of the GNU General Public License when using
++# or distributing such scripts, even though portions of the text of the
++# Macro appear in them. The GNU General Public License (GPL) does govern
++# all other use of the material that constitutes the Autoconf Macro.
++#
++# This special exception to the GPL applies to versions of the Autoconf
++# Macro released by the Autoconf Archive. When you make and distribute a
++# modified version of the Autoconf Macro, you may extend this special
++# exception to the GPL to apply to your modified version as well.
++
++#serial 15
++
++AU_ALIAS([ACX_BLAS], [AX_BLAS])
++AC_DEFUN([AX_BLAS], [
++AC_PREREQ(2.50)
++AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS])
++AC_REQUIRE([AC_CANONICAL_HOST])
++ax_blas_ok=no
++
++AC_ARG_WITH(blas,
++ [AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])])
++case $with_blas in
++ yes | "") ;;
++ no) ax_blas_ok=disable ;;
++ -* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;;
++ *) BLAS_LIBS="-l$with_blas" ;;
++esac
++
++# Get fortran linker names of BLAS functions to check for.
++AC_F77_FUNC(sgemm)
++AC_F77_FUNC(dgemm)
++
++ax_blas_save_LIBS="$LIBS"
++LIBS="$LIBS $FLIBS"
++
++# First, check BLAS_LIBS environment variable
++if test $ax_blas_ok = no; then
++if test "x$BLAS_LIBS" != x; then
++ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
++ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS])
++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""])
++ AC_MSG_RESULT($ax_blas_ok)
++ LIBS="$save_LIBS"
++fi
++fi
++
++# BLAS linked to by default? (happens on some supercomputers)
++if test $ax_blas_ok = no; then
++ save_LIBS="$LIBS"; LIBS="$LIBS"
++ AC_MSG_CHECKING([if $sgemm is being linked in already])
++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes])
++ AC_MSG_RESULT($ax_blas_ok)
++ LIBS="$save_LIBS"
++fi
++
++# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/)
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes
++ BLAS_LIBS="-lopenblas"])
++fi
++
++# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/)
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(atlas, ATL_xerbla,
++ [AC_CHECK_LIB(f77blas, $sgemm,
++ [AC_CHECK_LIB(cblas, cblas_dgemm,
++ [ax_blas_ok=yes
++ BLAS_LIBS="-lcblas -lf77blas -latlas"],
++ [], [-lf77blas -latlas])],
++ [], [-latlas])])
++fi
++
++# BLAS in PhiPACK libraries? (requires generic BLAS lib, too)
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(blas, $sgemm,
++ [AC_CHECK_LIB(dgemm, $dgemm,
++ [AC_CHECK_LIB(sgemm, $sgemm,
++ [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"],
++ [], [-lblas])],
++ [], [-lblas])])
++fi
++
++# BLAS in Intel MKL library?
++if test $ax_blas_ok = no; then
++ # MKL for gfortran
++ if test x"$ac_cv_fc_compiler_gnu" = xyes; then
++ # 64 bit
++ if test $host_cpu = x86_64; then
++ AC_CHECK_LIB(mkl_gf_lp64, $sgemm,
++ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
++ [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread])
++ # 32 bit
++ elif test $host_cpu = i686; then
++ AC_CHECK_LIB(mkl_gf, $sgemm,
++ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],,
++ [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread])
++ fi
++ # MKL for other compilers (Intel, PGI, ...?)
++ else
++ # 64-bit
++ if test $host_cpu = x86_64; then
++ AC_CHECK_LIB(mkl_intel_lp64, $sgemm,
++ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],,
++ [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread])
++ # 32-bit
++ elif test $host_cpu = i686; then
++ AC_CHECK_LIB(mkl_intel, $sgemm,
++ [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],,
++ [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread])
++ fi
++ fi
++fi
++# Old versions of MKL
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread])
++fi
++
++# BLAS in Apple vecLib library?
++if test $ax_blas_ok = no; then
++ save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS"
++ AC_MSG_CHECKING([for $sgemm in -framework vecLib])
++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"])
++ AC_MSG_RESULT($ax_blas_ok)
++ LIBS="$save_LIBS"
++fi
++
++# BLAS in Alpha CXML library?
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"])
++fi
++
++# BLAS in Alpha DXML library? (now called CXML, see above)
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"])
++fi
++
++# BLAS in Sun Performance library?
++if test $ax_blas_ok = no; then
++ if test "x$GCC" != xyes; then # only works with Sun CC
++ AC_CHECK_LIB(sunmath, acosp,
++ [AC_CHECK_LIB(sunperf, $sgemm,
++ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath"
++ ax_blas_ok=yes],[],[-lsunmath])])
++ fi
++fi
++
++# BLAS in SCSL library? (SGI/Cray Scientific Library)
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"])
++fi
++
++# BLAS in SGIMATH library?
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(complib.sgimath, $sgemm,
++ [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"])
++fi
++
++# BLAS in IBM ESSL library? (requires generic BLAS lib, too)
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(blas, $sgemm,
++ [AC_CHECK_LIB(essl, $sgemm,
++ [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"],
++ [], [-lblas $FLIBS])])
++fi
++
++# Generic BLAS library?
++if test $ax_blas_ok = no; then
++ AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"])
++fi
++
++AC_SUBST(BLAS_LIBS)
++
++LIBS="$ax_blas_save_LIBS"
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x"$ax_blas_ok" = xyes; then
++ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1])
++ :
++else
++ ax_blas_ok=no
++ $2
++fi
++])dnl AX_BLAS
+diff --git a/ax_lapack.m4 b/ax_lapack.m4
+new file mode 100644
+--- /dev/null
++++ b/ax_lapack.m4
+@@ -0,0 +1,131 @@
++# ===========================================================================
++# https://www.gnu.org/software/autoconf-archive/ax_lapack.html
++# ===========================================================================
++#
++# SYNOPSIS
++#
++# AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]])
++#
++# DESCRIPTION
++#
++# This macro looks for a library that implements the LAPACK linear-algebra
++# interface (see http://www.netlib.org/lapack/). On success, it sets the
++# LAPACK_LIBS output variable to hold the requisite library linkages.
++#
++# To link with LAPACK, you should link with:
++#
++# $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS
++#
++# in that order. BLAS_LIBS is the output variable of the AX_BLAS macro,
++# called automatically. FLIBS is the output variable of the
++# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is
++# sometimes necessary in order to link with F77 libraries. Users will also
++# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same
++# reason.
++#
++# The user may also use --with-lapack=<lib> in order to use some specific
++# LAPACK library <lib>. In order to link successfully, however, be aware
++# that you will probably need to use the same Fortran compiler (which can
++# be set via the F77 env. var.) as was used to compile the LAPACK and BLAS
++# libraries.
++#
++# ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library
++# is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it
++# is not found. If ACTION-IF-FOUND is not specified, the default action
++# will define HAVE_LAPACK.
++#
++# LICENSE
++#
++# Copyright (c) 2009 Steven G. Johnson <stevenj@alum.mit.edu>
++#
++# This program is free software: you can redistribute it and/or modify it
++# under the terms of the GNU General Public License as published by the
++# Free Software Foundation, either version 3 of the License, or (at your
++# option) any later version.
++#
++# This program is distributed in the hope that it will be useful, but
++# WITHOUT ANY WARRANTY; without even the implied warranty of
++# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
++# Public License for more details.
++#
++# You should have received a copy of the GNU General Public License along
++# with this program. If not, see <https://www.gnu.org/licenses/>.
++#
++# As a special exception, the respective Autoconf Macro's copyright owner
++# gives unlimited permission to copy, distribute and modify the configure
++# scripts that are the output of Autoconf when processing the Macro. You
++# need not follow the terms of the GNU General Public License when using
++# or distributing such scripts, even though portions of the text of the
++# Macro appear in them. The GNU General Public License (GPL) does govern
++# all other use of the material that constitutes the Autoconf Macro.
++#
++# This special exception to the GPL applies to versions of the Autoconf
++# Macro released by the Autoconf Archive. When you make and distribute a
++# modified version of the Autoconf Macro, you may extend this special
++# exception to the GPL to apply to your modified version as well.
++
++#serial 8
++
++AU_ALIAS([ACX_LAPACK], [AX_LAPACK])
++AC_DEFUN([AX_LAPACK], [
++AC_REQUIRE([AX_BLAS])
++ax_lapack_ok=no
++
++AC_ARG_WITH(lapack,
++ [AS_HELP_STRING([--with-lapack=<lib>], [use LAPACK library <lib>])])
++case $with_lapack in
++ yes | "") ;;
++ no) ax_lapack_ok=disable ;;
++ -* | */* | *.a | *.so | *.so.* | *.o) LAPACK_LIBS="$with_lapack" ;;
++ *) LAPACK_LIBS="-l$with_lapack" ;;
++esac
++
++# Get fortran linker name of LAPACK function to check for.
++AC_F77_FUNC(cheev)
++
++# We cannot use LAPACK if BLAS is not found
++if test "x$ax_blas_ok" != xyes; then
++ ax_lapack_ok=noblas
++ LAPACK_LIBS=""
++fi
++
++# First, check LAPACK_LIBS environment variable
++if test "x$LAPACK_LIBS" != x; then
++ save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS"
++ AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS])
++ AC_TRY_LINK_FUNC($cheev, [ax_lapack_ok=yes], [LAPACK_LIBS=""])
++ AC_MSG_RESULT($ax_lapack_ok)
++ LIBS="$save_LIBS"
++ if test $ax_lapack_ok = no; then
++ LAPACK_LIBS=""
++ fi
++fi
++
++# LAPACK linked to by default? (is sometimes included in BLAS lib)
++if test $ax_lapack_ok = no; then
++ save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS"
++ AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes])
++ LIBS="$save_LIBS"
++fi
++
++# Generic LAPACK library?
++for lapack in lapack lapack_rs6k; do
++ if test $ax_lapack_ok = no; then
++ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS"
++ AC_CHECK_LIB($lapack, $cheev,
++ [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS])
++ LIBS="$save_LIBS"
++ fi
++done
++
++AC_SUBST(LAPACK_LIBS)
++
++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
++if test x"$ax_lapack_ok" = xyes; then
++ ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1])
++ :
++else
++ ax_lapack_ok=no
++ $2
++fi
++])dnl AX_LAPACK
+diff --git a/configure.ac b/configure.ac
+new file mode 100644
+--- /dev/null
++++ b/configure.ac
+@@ -0,0 +1,36 @@
++# -*- Autoconf -*-
++# Process this file with autoconf to produce a configure script.
++
++AC_PREREQ([2.69])
++AC_INIT([qrupdate],[1.1.2],[highegg@gmail.com],[qrupdate],[https://sourceforge.net/projects/qrupdate/])
++AC_CONFIG_SRCDIR([src/sqr1up.f])
++AC_CONFIG_HEADERS([src/config.h])
++AM_INIT_AUTOMAKE([foreign])
++LT_INIT
++
++# Checks for programs.
++AC_PROG_INSTALL
++AC_PROG_F77
++
++# Checks for libraries.
++sinclude([ax_blas.m4])
++AX_BLAS([], [AC_MSG_ERROR([cannot find BLAS])])
++
++sinclude([ax_lapack.m4])
++AX_LAPACK([], [AC_MSG_ERROR([cannot find LAPACK])])
++
++# Checks for header files.
++
++# Checks for typedefs, structures, and compiler characteristics.
++
++# Checks for library functions.
++
++m4_ifdef([PKG_INSTALLDIR], [PKG_INSTALLDIR], [AC_SUBST([pkgconfigdir], [${libdir}/pkgconfig])])
++
++AC_CONFIG_FILES([
++ qrupdate.pc
++ Makefile
++ src/Makefile
++ test/Makefile
++])
++AC_OUTPUT
+diff --git a/qrupdate.pc.in b/qrupdate.pc.in
+new file mode 100644
+--- /dev/null
++++ b/qrupdate.pc.in
+@@ -0,0 +1,10 @@
++prefix=@prefix@
++exec_prefix=@exec_prefix@
++libdir=@libdir@
++
++Name: @PACKAGE_NAME@
++Description: Library for fast updating of QR and Cholesky decompositions
++Version: @PACKAGE_VERSION@
++URL: @PACKAGE_URL@
++Libs: -L${libdir} -lqrupdate
++Libs.private: @LAPACK_LIBS@ @BLAS_LIBS@
+diff --git a/src/Makefile.am b/src/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/src/Makefile.am
+@@ -0,0 +1,19 @@
++AM_FFLAGS = -fimplicit-none -O3 -funroll-loops
++
++SRC = caxcpy.f cch1dn.f cch1up.f cchdex.f cchinx.f cchshx.f cgqvec.f \
++cqhqr.f cqr1up.f cqrdec.f cqrder.f cqrinc.f cqrinr.f cqrot.f cqrqh.f \
++cqrshc.f cqrtv1.f dch1dn.f dch1up.f dchdex.f dchinx.f dchshx.f \
++dgqvec.f dqhqr.f dqr1up.f dqrdec.f dqrder.f dqrinc.f dqrinr.f dqrot.f \
++dqrqh.f dqrshc.f dqrtv1.f sch1dn.f sch1up.f schdex.f schinx.f schshx.f \
++sgqvec.f sqhqr.f sqr1up.f sqrdec.f sqrder.f sqrinc.f sqrinr.f sqrot.f \
++sqrqh.f sqrshc.f sqrtv1.f zaxcpy.f zch1dn.f zch1up.f zchdex.f zchinx.f \
++zchshx.f zgqvec.f zqhqr.f zqr1up.f zqrdec.f zqrder.f zqrinc.f zqrinr.f \
++zqrot.f zqrqh.f zqrshc.f zqrtv1.f \
++clu1up.f dlu1up.f slu1up.f zlu1up.f \
++clup1up.f dlup1up.f slup1up.f zlup1up.f
++
++lib_LTLIBRARIES = libqrupdate.la
++
++libqrupdate_la_SOURCES = $(SRC)
++libqrupdate_la_LIBADD = $(LAPACK_LIBS) $(BLAS_LIBS)
++libqrupdate_la_LDFLAGS = -no-undefined -version-number 1:1:2
+diff --git a/test/Makefile.am b/test/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/test/Makefile.am
+@@ -0,0 +1,32 @@
++AM_FFLAGS = -fimplicit-none -O3 -funroll-loops
++LDADD = $(top_builddir)/src/libqrupdate.la
++
++EXTRA_DIST = report_results
++
++check_PROGRAMS = \
++ tqr1up tqrinc tqrdec tqrshc tqrinr tqrder \
++ tch1up tch1dn tchinx tchdex tchshx \
++ tlu1up tlup1up
++
++tqr1up_SOURCES = tqr1up.f utils.f
++tqrinc_SOURCES = tqrinc.f utils.f
++tqrdec_SOURCES = tqrdec.f utils.f
++tqrshc_SOURCES = tqrshc.f utils.f
++tqrinr_SOURCES = tqrinr.f utils.f
++tqrder_SOURCES = tqrder.f utils.f
++tch1up_SOURCES = tch1up.f utils.f
++tch1dn_SOURCES = tch1dn.f utils.f
++tchinx_SOURCES = tchinx.f utils.f
++tchdex_SOURCES = tchdex.f utils.f
++tchshx_SOURCES = tchshx.f utils.f
++tlu1up_SOURCES = tlu1up.f utils.f
++tlup1up_SOURCES = tlup1up.f utils.f
++
++check-local: $(check_PROGRAMS)
++ @for i in $(check_PROGRAMS); do \
++ echo > $$i.out; \
++ ./$$i | tee $$i.out; \
++ done
++ @$(srcdir)/report_results $(check_PROGRAMS:%=%.out)
++
++CLEANFILES = *.out
diff --git a/academic/qrupdate/qrupdate.SlackBuild b/academic/qrupdate/qrupdate.SlackBuild
index cd581d5c4e..ee2e33b1dd 100644
--- a/academic/qrupdate/qrupdate.SlackBuild
+++ b/academic/qrupdate/qrupdate.SlackBuild
@@ -2,18 +2,36 @@
# Slackware build script for qrupdate
-# Written by Pablo Santamaria (pablosantamaria@gmail.com)
+# Copyright 2017 Kyle Guinn <elyk03@gmail.com>, USA
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=qrupdate
VERSION=${VERSION:-1.1.2}
-BUILD=${BUILD:-2}
+BUILD=${BUILD:-3}
TAG=${TAG:-_SBo}
if [ -z "$ARCH" ]; then
- case "$( uname -m )" in
- i?86) ARCH=i486 ;;
+ case "$(uname -m)" in
+ i?86) ARCH=i586 ;;
arm*) ARCH=arm ;;
- *) ARCH=$( uname -m ) ;;
+ *) ARCH=$(uname -m) ;;
esac
fi
@@ -22,9 +40,14 @@ TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
+DOCS="COPYING ChangeLog README"
+
if [ "$ARCH" = "i486" ]; then
SLKCFLAGS="-O2 -march=i486 -mtune=i686"
LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i586" ]; then
+ SLKCFLAGS="-O2 -march=i586 -mtune=i686"
+ LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
LIBDIRSUFFIX=""
@@ -45,21 +68,34 @@ rm -rf $PRGNAM-$VERSION
tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
cd $PRGNAM-$VERSION
chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
- -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
- -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
+chmod -R u+w,go-w,a+rX-st .
+
+patch -p1 < $CWD/patches/autotoolize.diff
+patch -p2 < $CWD/patches/atlas-lib-rename.diff
+autoreconf -vif
+
+./configure \
+ --prefix=/usr \
+ --libdir=/usr/lib${LIBDIRSUFFIX} \
+ --sysconfdir=/etc \
+ --localstatedir=/var \
+ --mandir=/usr/man \
+ --infodir=/usr/info \
+ --docdir=/usr/doc/$PRGNAM-$VERSION \
+ --enable-shared \
+ --disable-static \
+ --disable-dependency-tracking \
+ --build=$ARCH-slackware-linux \
+ FFLAGS="$SLKCFLAGS" \
-make solib FC=gfortran FFLAGS="$SLKCFLAGS -fimplicit-none -funroll-loops"
-make install-shlib LIBDIR=/usr/lib${LIBDIRSUFFIX} PREFIX=$PKG
-chmod 755 $PKG/usr/lib${LIBDIRSUFFIX}/libqrupdate.so.*
+make
+make check
+make install-strip DESTDIR=$PKG
-find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
- | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
+find $PKG/usr/lib${LIBDIRSUFFIX} -name '*.la' -delete
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-install -m644 COPYING README ChangeLog $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a $DOCS $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
mkdir -p $PKG/install
diff --git a/academic/qrupdate/qrupdate.info b/academic/qrupdate/qrupdate.info
index 93988b2389..55b1642ec7 100644
--- a/academic/qrupdate/qrupdate.info
+++ b/academic/qrupdate/qrupdate.info
@@ -5,6 +5,6 @@ DOWNLOAD="http://downloads.sourceforge.net/qrupdate/qrupdate-1.1.2.tar.gz"
MD5SUM="6d073887c6e858c24aeda5b54c57a8c4"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
-REQUIRES="lapack"
-MAINTAINER="Pablo Santamaria"
-EMAIL="pablosantamaria@gmail.com"
+REQUIRES="blas lapack"
+MAINTAINER="Kyle Guinn"
+EMAIL="elyk03@gmail.com"