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author Petar Petrov <slackalaxy@gmail.com>2020-01-05 18:28:32 -0600
committer Willy Sudiarto Raharjo <willysr@slackbuilds.org>2020-01-12 08:48:02 +0700
commit15f3312a7ef3a6bd36ac229bdf25c4a61c774b8b (patch)
treedb4ec24e0848727397baf8ddd80ab8fd73a28b80 /academic
parent9a635a04ba5e148019b5c0a76c69e47abb8327e7 (diff)
downloadslackbuilds-15f3312a7ef3a6bd36ac229bdf25c4a61c774b8b.tar.gz
slackbuilds-15f3312a7ef3a6bd36ac229bdf25c4a61c774b8b.tar.xz
academic/RepeatMasker: Updated for version 4.1.0.
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/RepeatMasker/README2
-rw-r--r--academic/RepeatMasker/RepeatMasker.SlackBuild9
-rw-r--r--academic/RepeatMasker/RepeatMasker.info6
3 files changed, 8 insertions, 9 deletions
diff --git a/academic/RepeatMasker/README b/academic/RepeatMasker/README
index a62062fa85..536b0897a5 100644
--- a/academic/RepeatMasker/README
+++ b/academic/RepeatMasker/README
@@ -20,7 +20,7 @@ supports Dfam (profile HMM library derived from Repbase sequences) and
Repbase, a service of the Genetic Information Research Institute.
WARNING!
-Due to the bundled databases, the installed size of this is 1.8 GiB!
+Due to the bundled databases, the installed size of this is 2.1 GB!
NOTE!
The package is installed in /opt. After install go fo /opt/RepeatMasker
diff --git a/academic/RepeatMasker/RepeatMasker.SlackBuild b/academic/RepeatMasker/RepeatMasker.SlackBuild
index 48aa2372d3..b94763c2a8 100644
--- a/academic/RepeatMasker/RepeatMasker.SlackBuild
+++ b/academic/RepeatMasker/RepeatMasker.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for RepeatMasker
-# Copyright 2018-2019 Petar Petrov slackalaxy@gmail.com
+# Copyright 2018-2020 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -23,11 +23,10 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=RepeatMasker
-VERSION=${VERSION:-4.0.9_p2}
+VERSION=${VERSION:-4.1.0}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
-SRCVER=${SRCVER:-4-0-9-p2}
ARCH=noarch
CWD=$(pwd)
@@ -42,7 +41,7 @@ rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf $PRGNAM
-tar xvf $CWD/$PRGNAM-open-$SRCVER.tar.gz
+tar xvf $CWD/$PRGNAM-$VERSION.tar.gz
cd $PRGNAM
chown -R root:root .
find -L . \
@@ -67,7 +66,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
# Better just copy these and not move them from their original dir
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
- bluegrad.jpg daterepeats.help HTMLAnnotHeader.html INSTALL LICENSE README.md repeatmasker.help \
+ bluegrad.jpg daterepeats.help HTMLAnnotHeader.html INSTALL LICENSE README.md repeatmasker.help ReleaseNotes \
$PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
cat $CWD/README.SLACKWARE > $PKG/usr/doc/$PRGNAM-$VERSION/README.SLACKWARE
diff --git a/academic/RepeatMasker/RepeatMasker.info b/academic/RepeatMasker/RepeatMasker.info
index 4f932a9042..62eacca432 100644
--- a/academic/RepeatMasker/RepeatMasker.info
+++ b/academic/RepeatMasker/RepeatMasker.info
@@ -1,8 +1,8 @@
PRGNAM="RepeatMasker"
-VERSION="4.0.9_p2"
+VERSION="4.1.0"
HOMEPAGE="http://www.repeatmasker.org/"
-DOWNLOAD="http://www.repeatmasker.org/RepeatMasker-open-4-0-9-p2.tar.gz"
-MD5SUM="6e957630d698422245682701de2ce756"
+DOWNLOAD="http://www.repeatmasker.org/RepeatMasker-4.1.0.tar.gz"
+MD5SUM="936894df2b8291f42afce22a5793b4bf"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="perl-Text-Soundex trfind HMMER ncbi-rmblastn"