summaryrefslogtreecommitdiffstats
path: root/academic
diff options
context:
space:
mode:
author Rob van Nues <sborg63@disroot.org>2019-01-27 12:05:09 -0600
committer Willy Sudiarto Raharjo <willysr@slackbuilds.org>2019-02-02 08:12:10 +0700
commit18da22d1e25386357dd7842c8e42500ba42b6af6 (patch)
tree6a437a15a3beb8b452a9fc31f80ff7b3d29b6d48 /academic
parent8ff4ce2fddc5751d387ff4cf240fcc50fb4932ba (diff)
downloadslackbuilds-18da22d1e25386357dd7842c8e42500ba42b6af6.tar.gz
slackbuilds-18da22d1e25386357dd7842c8e42500ba42b6af6.tar.xz
academic/STAR: Updated for version 2.7.0a.
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/STAR/README5
-rw-r--r--academic/STAR/STAR.SlackBuild4
-rw-r--r--academic/STAR/STAR.info6
-rw-r--r--academic/STAR/slack-desc8
4 files changed, 13 insertions, 10 deletions
diff --git a/academic/STAR/README b/academic/STAR/README
index 24272d0a1f..7d410d628f 100644
--- a/academic/STAR/README
+++ b/academic/STAR/README
@@ -2,6 +2,9 @@ STAR aligns short and long RNA-seq reads to a reference genome using
uncompressed suffix arrays, resulting in fast, accurate mapping.
STAR is capable of unbiased de novo detection of canonical splice
junctions, can discover non-canonical splices and chimeric (fusion)
-transcripts and can map full-length RNA sequences.
+transcripts and can map full-length RNA sequences. Comes with
+STARsolo for: mapping, demultiplexing and gene quantification for
+single cell RNA-seq (See STARmanual).
+
Reference: https://www.ncbi.nlm.nih.gov/pubmed/23104886
diff --git a/academic/STAR/STAR.SlackBuild b/academic/STAR/STAR.SlackBuild
index b5818beaec..889cb508b3 100644
--- a/academic/STAR/STAR.SlackBuild
+++ b/academic/STAR/STAR.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for STAR
-# Copyright 2018 Rob van Nues
+# Copyright 2018-2019 Rob van Nues
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -23,7 +23,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=STAR
-VERSION=${VERSION:-2.6.1d}
+VERSION=${VERSION:-2.7.0a}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
diff --git a/academic/STAR/STAR.info b/academic/STAR/STAR.info
index 8929bb763d..a32b34aee2 100644
--- a/academic/STAR/STAR.info
+++ b/academic/STAR/STAR.info
@@ -1,10 +1,10 @@
PRGNAM="STAR"
-VERSION="2.6.1d"
+VERSION="2.7.0a"
HOMEPAGE="https://github.com/alexdobin/STAR"
DOWNLOAD="UNSUPPORTED"
MD5SUM=""
-DOWNLOAD_x86_64="https://github.com/alexdobin/STAR/archive/2.6.1d/STAR-2.6.1d.tar.gz"
-MD5SUM_x86_64="c74965ee85f551641175b63f8a26a6f5"
+DOWNLOAD_x86_64="https://github.com/alexdobin/STAR/archive/2.7.0a/STAR-2.7.0a.tar.gz"
+MD5SUM_x86_64="318f0ef28bb85f3a2306f4b0796e0cf5"
REQUIRES=""
MAINTAINER="Rob van Nues"
EMAIL="sborg63@disroot.org"
diff --git a/academic/STAR/slack-desc b/academic/STAR/slack-desc
index 433a7dfbb0..ac9ff6cc26 100644
--- a/academic/STAR/slack-desc
+++ b/academic/STAR/slack-desc
@@ -9,10 +9,10 @@
STAR: STAR (Spliced Transcripts Alignment to a Reference)
STAR:
STAR: STAR aligns short and long RNA-seq reads to a reference genome using
-STAR: uncompressed suffix arrays, resulting in fast, accurate mapping.
-STAR: STAR is capable of unbiased de novo detection of canonical junctions,
-STAR: can discover non-canonical splices and chimeric (fusion) transcripts
-STAR: and can map full-length RNA sequences.
+STAR: uncompressed suffix arrays, resulting in fast, accurate mapping. STAR
+STAR: is capable of unbiased de novo detection of canonical junctions, can
+STAR: discover non-canonical splices and chimeric transcripts, can map full-
+STAR: length RNA sequences and can be used for single cell RNA-seq mapping.
STAR:
STAR: https://github.com/alexdobin/STAR
STAR: Reference: https://www.ncbi.nlm.nih.gov/pubmed/23104886