From b7e03e6316cecca89c5f0444ade92faeb5320ede Mon Sep 17 00:00:00 2001 From: Petar Petrov Date: Sat, 14 Dec 2013 09:35:55 +0700 Subject: academic/topdraw: Added (A sketchpad for protein topology diagrams). Signed-off-by: Willy Sudiarto Raharjo --- academic/topdraw/README | 17 ++++++++++ academic/topdraw/References | 3 ++ academic/topdraw/doinst.sh | 3 ++ academic/topdraw/slack-desc | 19 +++++++++++ academic/topdraw/topdraw.SlackBuild | 63 ++++++++++++++++++++++++++++++++++++ academic/topdraw/topdraw.desktop | 8 +++++ academic/topdraw/topdraw.info | 10 ++++++ academic/topdraw/topdraw.png | Bin 0 -> 4494 bytes 8 files changed, 123 insertions(+) create mode 100644 academic/topdraw/README create mode 100644 academic/topdraw/References create mode 100644 academic/topdraw/doinst.sh create mode 100644 academic/topdraw/slack-desc create mode 100644 academic/topdraw/topdraw.SlackBuild create mode 100644 academic/topdraw/topdraw.desktop create mode 100644 academic/topdraw/topdraw.info create mode 100644 academic/topdraw/topdraw.png (limited to 'academic') diff --git a/academic/topdraw/README b/academic/topdraw/README new file mode 100644 index 0000000000..c16c5424e6 --- /dev/null +++ b/academic/topdraw/README @@ -0,0 +1,17 @@ +TopDraw is a sketchpad for drawing topology cartoons of proteins +written in Tcl/Tk. It does not calculate topology from a PDB file, but +merely allows you to sketch a topology derived from another source. + +Features: +- Easy sketching of protein topologies +- Save/Open function for reusing/editing previous drawings +- Postscript output for printing/publication +- Horizontal or vertical helices and strands +- New version allows diagonal connections + +Note: The source is not versioned, so a MD5SUM missmatch is expected +when upstream released a new version. + +Reference: +TopDraw: a sketchpad for protein structure topology cartoons. Bond CS. +Bioinformatics. 2003 Jan 22;19(2):311-2. diff --git a/academic/topdraw/References b/academic/topdraw/References new file mode 100644 index 0000000000..cc4e429cf5 --- /dev/null +++ b/academic/topdraw/References @@ -0,0 +1,3 @@ +Reference: +TopDraw: a sketchpad for protein structure topology cartoons. Bond CS. +Bioinformatics. 2003 Jan 22;19(2):311-2. diff --git a/academic/topdraw/doinst.sh b/academic/topdraw/doinst.sh new file mode 100644 index 0000000000..5fb28930db --- /dev/null +++ b/academic/topdraw/doinst.sh @@ -0,0 +1,3 @@ +if [ -x /usr/bin/update-desktop-database ]; then + /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1 +fi diff --git a/academic/topdraw/slack-desc b/academic/topdraw/slack-desc new file mode 100644 index 0000000000..eba5c1a4e1 --- /dev/null +++ b/academic/topdraw/slack-desc @@ -0,0 +1,19 @@ +# HOW TO EDIT THIS FILE: +# The "handy ruler" below makes it easier to edit a package description. +# Line up the first '|' above the ':' following the base package name, and +# the '|' on the right side marks the last column you can put a character in. +# You must make exactly 11 lines for the formatting to be correct. It's also +# customary to leave one space after the ':' except on otherwise blank lines. + + |-----handy-ruler------------------------------------------------------| +topdraw: topdraw (A sketchpad for protein topology diagrams) +topdraw: +topdraw: TopDraw is a sketchpad for drawing topology cartoons of proteins +topdraw: written in Tcl/Tk. It does not calculate topology from a PDB file, +topdraw: merely allows you to sketch a topology derived from another source. +topdraw: +topdraw: Home: http://crystal.scb.uwa.edu.au/charlie/software/topdraw/ +topdraw: References: /usr/doc/topdraw-sep2002/References +topdraw: +topdraw: +topdraw: diff --git a/academic/topdraw/topdraw.SlackBuild b/academic/topdraw/topdraw.SlackBuild new file mode 100644 index 0000000000..4a74c94c84 --- /dev/null +++ b/academic/topdraw/topdraw.SlackBuild @@ -0,0 +1,63 @@ +#!/bin/sh + +# Slackware build script for topdraw + +# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi +# All rights reserved. +# +# Redistribution and use of this script, with or without modification, is +# permitted provided that the following conditions are met: +# +# 1. Redistributions of this script must retain the above copyright +# notice, this list of conditions and the following disclaimer. +# +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + +PRGNAM=topdraw +VERSION=${VERSION:-sep2002} +BUILD=${BUILD:-1} +TAG=${TAG:-_SBo} + +ARCH=noarch + +CWD=$(pwd) +TMP=${TMP:-/tmp/SBo} +PKG=$TMP/package-$PRGNAM +OUTPUT=${OUTPUT:-/tmp} + +set -e + +rm -rf $PKG +mkdir -p $TMP $PKG $OUTPUT +cd $TMP +rm -rf $PRGNAM-$VERSION +mkdir $PRGNAM-$VERSION +cd $PRGNAM-$VERSION +unzip $CWD/$PRGNAM.zip + +install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM + +mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION +cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References +cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild + +# Couldn't find an icon, so I assembled this thing from the program's menu... +mkdir -p $PKG/usr/share/{applications,pixmaps} +cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications +cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps + +mkdir -p $PKG/install +cat $CWD/slack-desc > $PKG/install/slack-desc +cat $CWD/doinst.sh > $PKG/install/doinst.sh + +cd $PKG +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} diff --git a/academic/topdraw/topdraw.desktop b/academic/topdraw/topdraw.desktop new file mode 100644 index 0000000000..954d4aba81 --- /dev/null +++ b/academic/topdraw/topdraw.desktop @@ -0,0 +1,8 @@ +[Desktop Entry] +Name=TopDraw +Comment=A sketchpad for protein topology diagrams +Exec=topdraw +Icon=topdraw +StartupNotify=false +Type=Application +Categories=Education; diff --git a/academic/topdraw/topdraw.info b/academic/topdraw/topdraw.info new file mode 100644 index 0000000000..0119d2ae53 --- /dev/null +++ b/academic/topdraw/topdraw.info @@ -0,0 +1,10 @@ +PRGNAM="topdraw" +VERSION="sep2002" +HOMEPAGE="http://crystal.scb.uwa.edu.au/charlie/software/topdraw/" +DOWNLOAD="http://crystal.scb.uwa.edu.au/charlie/software/topdraw/topdraw.zip" +MD5SUM="9827abf8ea33ea7f0811873661565925" +DOWNLOAD_x86_64="" +MD5SUM_x86_64="" +REQUIRES="" +MAINTAINER="Petar Petrov" +EMAIL="petar.petrov@student.oulu.fi" diff --git a/academic/topdraw/topdraw.png b/academic/topdraw/topdraw.png new file mode 100644 index 0000000000..750f918930 Binary files /dev/null and b/academic/topdraw/topdraw.png differ -- cgit v1.2.3