diff --git a/Check/Makefile.am b/Check/Makefile.am new file mode 100644 --- /dev/null +++ b/Check/Makefile.am @@ -0,0 +1,27 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + lesser.txt + +CHECKSRC = \ + cholmod_check.c \ + cholmod_read.c \ + cholmod_write.c + +noinst_LTLIBRARIES = \ + libchecki.la \ + libcheckl.la \ + libcheck.la + +libchecki_la_SOURCES = $(CHECKSRC) +libchecki_la_LIBADD = $(SUITESPARSECONFIG_LIBS) $(CODE_COVERAGE_LIBS) +libchecki_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libchecki_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libcheckl_la_SOURCES = $(CHECKSRC) +libcheckl_la_LIBADD = $(SUITESPARSECONFIG_LIBS) $(CODE_COVERAGE_LIBS) +libcheckl_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) -DDLONG +libcheckl_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libcheck_la_SOURCES = +libcheck_la_LIBADD = libchecki.la libcheckl.la diff --git a/Cholesky/Makefile.am b/Cholesky/Makefile.am new file mode 100644 --- /dev/null +++ b/Cholesky/Makefile.am @@ -0,0 +1,42 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(COLAMD_CFLAGS) $(AMD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + lesser.txt + +CHOLESKYSRC = \ + cholmod_amd.c \ + cholmod_analyze.c \ + cholmod_colamd.c \ + cholmod_etree.c \ + cholmod_factorize.c \ + cholmod_postorder.c \ + cholmod_rcond.c \ + cholmod_resymbol.c \ + cholmod_rowcolcounts.c \ + cholmod_rowfac.c \ + cholmod_solve.c \ + cholmod_spsolve.c + +noinst_HEADERS = \ + t_cholmod_lsolve.c \ + t_cholmod_ltsolve.c \ + t_cholmod_rowfac.c \ + t_cholmod_solve.c + +noinst_LTLIBRARIES = \ + libcholeskyi.la \ + libcholeskyl.la \ + libcholesky.la + +libcholeskyi_la_SOURCES = $(CHOLESKYSRC) +libcholeskyi_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libcholeskyi_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libcholeskyi_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libcholeskyl_la_SOURCES = $(CHOLESKYSRC) +libcholeskyl_la_LIBADD = $(COLAMD_LIBS) $(AMD_LIBS) $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libcholeskyl_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) -DDLONG +libcholeskyl_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libcholesky_la_SOURCES = +libcholesky_la_LIBADD = libcholeskyi.la libcholeskyl.la diff --git a/Core/Makefile.am b/Core/Makefile.am new file mode 100644 --- /dev/null +++ b/Core/Makefile.am @@ -0,0 +1,45 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + lesser.txt + +CORESRC = \ + cholmod_aat.c \ + cholmod_add.c \ + cholmod_band.c \ + cholmod_change_factor.c \ + cholmod_common.c \ + cholmod_complex.c \ + cholmod_copy.c \ + cholmod_dense.c \ + cholmod_error.c \ + cholmod_factor.c \ + cholmod_memory.c \ + cholmod_sparse.c \ + cholmod_transpose.c \ + cholmod_triplet.c \ + cholmod_version.c + +noinst_HEADERS = \ + t_cholmod_change_factor.c \ + t_cholmod_dense.c \ + t_cholmod_transpose.c \ + t_cholmod_triplet.c + +noinst_LTLIBRARIES = \ + libcorei.la \ + libcorel.la \ + libcore.la + +libcorei_la_SOURCES = $(CORESRC) +libcorei_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libcorei_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libcorei_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libcorel_la_SOURCES = $(CORESRC) +libcorel_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libcorel_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) -DDLONG +libcorel_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libcore_la_SOURCES = +libcore_la_LIBADD = libcorei.la libcorel.la diff --git a/Demo/Makefile.am b/Demo/Makefile.am new file mode 100644 --- /dev/null +++ b/Demo/Makefile.am @@ -0,0 +1,142 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + README.txt \ + gpl.txt + +dist_noinst_DATA = \ + Matrix/0.tri \ + Matrix/bcsstk01.tri \ + Matrix/bcsstk02.tri \ + Matrix/c.mtx \ + Matrix/c.tri \ + Matrix/can___24.mtx \ + Matrix/d.tri \ + Matrix/empty.tri \ + Matrix/lp_afiro.tri \ + Matrix/mangle1.mtx \ + Matrix/mangle2.mtx \ + Matrix/mangle3.mtx \ + Matrix/mangle4.mtx \ + Matrix/mangle5.tri \ + Matrix/mangle6.tri \ + Matrix/mangle7.tri \ + Matrix/mangle8.tri \ + Matrix/one.tri \ + Matrix/pts5ldd03.mtx \ + Matrix/up.tri + +noinst_PROGRAMS = \ + reade \ + readhb \ + readhb2 + +reade_SOURCES = reade.f +readhb_SOURCES = readhb.f +readhb2_SOURCES = readhb2.f + +if MOD_CHECK +if MOD_CHOLESKY + +check_PROGRAMS = \ + cholmod_demo \ + cholmod_l_demo \ + cholmod_simple + +cholmod_demo_SOURCES = cholmod_demo.c cholmod_demo.h +cholmod_demo_LDADD = $(top_builddir)/libcholmod.la $(SUITESPARSECONFIG_LIBS) + +cholmod_l_demo_SOURCES = cholmod_l_demo.c cholmod_demo.h +cholmod_l_demo_LDADD = $(top_builddir)/libcholmod.la $(SUITESPARSECONFIG_LIBS) +cholmod_l_demo_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG + +cholmod_simple_SOURCES = cholmod_simple.c +cholmod_simple_LDADD = $(top_builddir)/libcholmod.la + +if !CODE_COVERAGE_ENABLED +MATRICES = \ + $(srcdir)/Matrix/bcsstk01.tri \ + $(srcdir)/Matrix/c.tri \ + $(srcdir)/Matrix/can___24.mtx \ + $(srcdir)/Matrix/lp_afiro.tri + +check-local: $(check_PROGRAMS) $(MATRICES) + ./cholmod_demo < $(srcdir)/Matrix/bcsstk01.tri + ./cholmod_l_demo < $(srcdir)/Matrix/bcsstk01.tri + ./cholmod_demo < $(srcdir)/Matrix/lp_afiro.tri + ./cholmod_l_demo < $(srcdir)/Matrix/lp_afiro.tri + ./cholmod_demo < $(srcdir)/Matrix/can___24.mtx + ./cholmod_l_demo < $(srcdir)/Matrix/can___24.mtx + ./cholmod_demo < $(srcdir)/Matrix/c.tri + ./cholmod_l_demo < $(srcdir)/Matrix/c.tri + ./cholmod_simple < $(srcdir)/Matrix/c.tri + ./cholmod_simple < $(srcdir)/Matrix/can___24.mtx + ./cholmod_simple < $(srcdir)/Matrix/bcsstk01.tri + +else +MATRICES = \ + $(srcdir)/Matrix/0.tri \ + $(srcdir)/Matrix/bcsstk01.tri \ + $(srcdir)/Matrix/bcsstk02.tri \ + $(srcdir)/Matrix/c.mtx \ + $(srcdir)/Matrix/c.tri \ + $(srcdir)/Matrix/can___24.mtx \ + $(srcdir)/Matrix/d.tri \ + $(srcdir)/Matrix/lp_afiro.tri \ + $(srcdir)/Matrix/mangle1.mtx \ + $(srcdir)/Matrix/mangle2.mtx \ + $(srcdir)/Matrix/mangle3.mtx \ + $(srcdir)/Matrix/mangle4.mtx \ + $(srcdir)/Matrix/pts5ldd03.mtx \ + $(srcdir)/Matrix/up.tri \ + $(top_srcdir)/Tcov/Matrix/3_2 \ + $(top_srcdir)/Tcov/Matrix/c10 \ + $(top_srcdir)/Tcov/Matrix/c5lo + +check-local: $(check_PROGRAMS) $(MATRICES) + ./cholmod_demo $(srcdir)/Matrix/bcsstk01.tri > demo_k1.out + ./cholmod_demo $(srcdir)/Matrix/bcsstk02.tri > demo_k2.out + ./cholmod_demo < $(srcdir)/Matrix/lp_afiro.tri > demo_afiro.out + ./cholmod_demo < $(srcdir)/Matrix/can___24.mtx > demo_can24.out + ./cholmod_demo < $(srcdir)/Matrix/c.tri > demo_c.out + ./cholmod_demo < $(srcdir)/Matrix/d.tri > demo_d.out + ./cholmod_demo < $(srcdir)/Matrix/up.tri > demo_up.out + ./cholmod_demo < $(srcdir)/Matrix/c.mtx > demo_c_mtx.out + ./cholmod_demo < $(srcdir)/Matrix/0.tri > demo_0.out + ./cholmod_demo < $(top_srcdir)/Tcov/Matrix/3_2 > demo_3_2.out + ./cholmod_demo < $(top_srcdir)/Tcov/Matrix/c5lo > demo_c5lo.out + ./cholmod_demo < $(top_srcdir)/Tcov/Matrix/c10 > demo_c10.out + ./cholmod_demo no_such_file > demo_no_such_file.out + ./cholmod_demo $(srcdir)/Matrix/mangle1.mtx > demo_mangle1.out + ./cholmod_demo $(srcdir)/Matrix/mangle2.mtx > demo_mangle2.out + ./cholmod_demo $(srcdir)/Matrix/mangle3.mtx > demo_mangle3.out + ./cholmod_demo $(srcdir)/Matrix/mangle4.mtx > demo_mangle4.out + ./cholmod_demo $(srcdir)/Matrix/pts5ldd03.mtx > demo_pts5ldd03.out + ./cholmod_l_demo $(srcdir)/Matrix/bcsstk01.tri > ldemo_k1.out + ./cholmod_l_demo $(srcdir)/Matrix/bcsstk02.tri > ldemo_k2.out + ./cholmod_l_demo < $(srcdir)/Matrix/lp_afiro.tri > ldemo_afiro.out + ./cholmod_l_demo < $(srcdir)/Matrix/can___24.mtx > ldemo_can24.out + ./cholmod_l_demo < $(srcdir)/Matrix/c.tri > ldemo_c.out + ./cholmod_l_demo $(srcdir)/Matrix/c.tri 1 > ldemo_c_zomplex.out + ./cholmod_l_demo < $(srcdir)/Matrix/d.tri > ldemo_d.out + ./cholmod_l_demo $(srcdir)/Matrix/d.tri 1 > ldemo_d.out + ./cholmod_l_demo < $(srcdir)/Matrix/up.tri > ldemo_up.out + ./cholmod_l_demo $(srcdir)/Matrix/up.tri 1 > ldemo_up_zomplex.out + ./cholmod_l_demo < $(srcdir)/Matrix/c.mtx > ldemo_c_mtx.out + ./cholmod_l_demo $(srcdir)/Matrix/c.mtx 1 > ldemo_c_mtx_zomplex.out + ./cholmod_l_demo < $(srcdir)/Matrix/0.tri > ldemo_0.out + ./cholmod_l_demo < $(top_srcdir)/Tcov/Matrix/3_2 > ldemo_3_2.out + ./cholmod_l_demo < $(top_srcdir)/Tcov/Matrix/c5lo > ldemo_c5lo.out + ./cholmod_l_demo < $(top_srcdir)/Tcov/Matrix/c10 > ldemo_c10.out + ./cholmod_l_demo no_such_file > ldemo_no_such_file.out + ./cholmod_l_demo $(srcdir)/Matrix/mangle1.mtx > ldemo_mangle1.out + ./cholmod_l_demo $(srcdir)/Matrix/mangle2.mtx > ldemo_mangle2.out + ./cholmod_l_demo $(srcdir)/Matrix/mangle3.mtx > ldemo_mangle3.out + ./cholmod_l_demo $(srcdir)/Matrix/mangle4.mtx > ldemo_mangle4.out + ./cholmod_l_demo $(srcdir)/Matrix/pts5ldd03.mtx > ldemo_pts5ldd03.out +endif + +endif +endif + +CLEANFILES = timelog.m *.out diff --git a/Doc/Makefile.am b/Doc/Makefile.am new file mode 100644 --- /dev/null +++ b/Doc/Makefile.am @@ -0,0 +1,442 @@ +EXTRA_DIST = \ + ChangeLog \ + License.txt + +dist_noinst_DATA = \ + UserGuide.bib \ + CHOLMOD_UserGuide.tex \ + header.tex \ + footer.tex \ + mheader.tex \ + mfooter.tex \ + mfile.awk \ + rule.awk + +dist_pdf_DATA = \ + CHOLMOD_UserGuide.pdf + +dist_noinst_SCRIPTS = \ + getmproto \ + getproto + +# ./getmproto file.m > _file_m.tex +define getmproto = +( \ +cat $(srcdir)/mheader.tex; \ +expand -8 $< | awk -f $(srcdir)/mfile.awk; \ +cat $(srcdir)/mfooter.tex; \ +) > $@ +endef + +# ./getproto 'proto' header.h > _file.tex +define getproto = +( \ +echo -n $(PATTERN); \ +cat $(srcdir)/rule.awk; \ +) > $(basename $@).awk +( \ +cat $(srcdir)/header.tex; \ +expand -8 $< | awk -f $(basename $@).awk; \ +cat $(srcdir)/footer.tex; \ +) > $@ +$(RM) $(basename $@).awk +endef + +PROTO_M = \ + _analyze_m.tex \ + _bisect_m.tex \ + _chol2_m.tex \ + _cholmod2_m.tex \ + _cholmod_demo_m.tex \ + _cholmod_make_m.tex \ + _etree2_m.tex \ + _graph_demo_m.tex \ + _lchol_m.tex \ + _ldl_normest_m.tex \ + _ldlchol_m.tex \ + _ldlsolve_m.tex \ + _ldlsplit_m.tex \ + _ldlupdate_m.tex \ + _ldlrowmod_m.tex \ + _metis_m.tex \ + _mread_m.tex \ + _mwrite_m.tex \ + _nesdis_m.tex \ + _resymbol_m.tex \ + _sdmult_m.tex \ + _sparse2_m.tex \ + _spsym_m.tex \ + _symbfact2_m.tex + +$(PROTO_M): mheader.tex mfile.awk mfooter.tex +_%_m.tex: $(top_srcdir)/MATLAB/%.m + $(getmproto) + +PROTO_SIMPLE = \ + _simple.tex + +_simple.tex: PATTERN = '/include/, /^}/' + +$(PROTO_SIMPLE): $(top_srcdir)/Demo/cholmod_simple.c header.tex rule.awk footer.tex + $(getproto) + +PROTO_CORE = \ + _common.tex \ + _start.tex \ + _finish.tex \ + _defaults.tex \ + _maxrank.tex \ + _allocate_work.tex \ + _free_work.tex \ + _clear_flag.tex \ + _error.tex \ + _dbound.tex \ + _hypot.tex \ + _divcomplex.tex \ + _sparse.tex \ + _allocate_sparse.tex \ + _free_sparse.tex \ + _reallocate_sparse.tex \ + _nnz.tex \ + _speye.tex \ + _spzeros.tex \ + _transpose.tex \ + _transpose_unsym.tex \ + _transpose_sym.tex \ + _ptranspose.tex \ + _sort.tex \ + _band.tex \ + _band_inplace.tex \ + _aat.tex \ + _copy_sparse.tex \ + _copy.tex \ + _add.tex \ + _sparse_xtype.tex \ + _factor.tex \ + _allocate_factor.tex \ + _free_factor.tex \ + _reallocate_factor.tex \ + _change_factor.tex \ + _pack_factor.tex \ + _reallocate_column.tex \ + _factor_to_sparse.tex \ + _copy_factor.tex \ + _factor_xtype.tex \ + _dense.tex \ + _allocate_dense.tex \ + _ensure_dense.tex \ + _zeros.tex \ + _ones.tex \ + _eye.tex \ + _free_dense.tex \ + _sparse_to_dense.tex \ + _dense_to_sparse.tex \ + _copy_dense.tex \ + _copy_dense2.tex \ + _dense_xtype.tex \ + _triplet.tex \ + _allocate_triplet.tex \ + _free_triplet.tex \ + _reallocate_triplet.tex \ + _sparse_to_triplet.tex \ + _triplet_to_sparse.tex \ + _copy_triplet.tex \ + _triplet_xtype.tex \ + _malloc.tex \ + _calloc.tex \ + _free.tex \ + _realloc.tex \ + _realloc_multiple.tex \ + _version.tex \ + _defn.tex + +_common.tex: PATTERN = '/typedef struct cholmod_common/, /^}/' +_start.tex: PATTERN = '/int cholmod_start/, /\*\) ;/' +_finish.tex: PATTERN = '/int cholmod_finish/, /\*\) ;/' +_defaults.tex: PATTERN = '/int cholmod_defaults/, /\*\) ;/' +_maxrank.tex: PATTERN = '/size_t cholmod_maxrank/, /\*\) ;/' +_allocate_work.tex: PATTERN = '/int cholmod_allocate_work/, /\*\) ;/' +_free_work.tex: PATTERN = '/int cholmod_free_work/, /\*\) ;/' +_clear_flag.tex: PATTERN = '/long cholmod_clear_flag/, /\*\) ;/' +_error.tex: PATTERN = '/int cholmod_error/, /\*\) ;/' +_dbound.tex: PATTERN = '/double cholmod_dbound/, /\*\) ;/' +_hypot.tex: PATTERN = '/double cholmod_hypot/, /double\) ;/' +_divcomplex.tex: PATTERN = '/int cholmod_divcomplex/, /\*\) ;/' +_sparse.tex: PATTERN = '/typedef struct cholmod_sparse/, /^}/' +_allocate_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_allocate_sparse/, /\*\) ;/' +_free_sparse.tex: PATTERN = '/int cholmod_free_sparse/, /\*\) ;/' +_reallocate_sparse.tex: PATTERN = '/int cholmod_reallocate_sparse/, /\*\) ;/' +_nnz.tex: PATTERN = '/long cholmod_nnz/, /\*\) ;/' +_speye.tex: PATTERN = '/cholmod_sparse \*cholmod_speye/, /\*\) ;/' +_spzeros.tex: PATTERN = '/cholmod_sparse \*cholmod_spzeros/, /\*\) ;/' +_transpose.tex: PATTERN = '/cholmod_sparse \*cholmod_transpose/, /\*\) ;/' +_transpose_unsym.tex: PATTERN = '/int cholmod_transpose_unsym/, /\*\) ;/' +_transpose_sym.tex: PATTERN = '/int cholmod_transpose_sym/, /\*\) ;/' +_ptranspose.tex: PATTERN = '/cholmod_sparse \*cholmod_ptranspose/, /\*\) ;/' +_sort.tex: PATTERN = '/int cholmod_sort/, /\*\) ;/' +_band.tex: PATTERN = '/cholmod_sparse \*cholmod_band/, /\*\) ;/' +_band_inplace.tex: PATTERN = '/int cholmod_band_inplace/, /\*\) ;/' +_aat.tex: PATTERN = '/cholmod_sparse \*cholmod_aat/, /\*\) ;/' +_copy_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_copy_sparse/, /\*\) ;/' +_copy.tex: PATTERN = '/cholmod_sparse \*cholmod_copy /, /\*\) ;/' +_add.tex: PATTERN = '/cholmod_sparse \*cholmod_add/, /\*\) ;/' +_sparse_xtype.tex: PATTERN = '/int cholmod_sparse_xtype/, /\*\) ;/' +_factor.tex: PATTERN = '/typedef struct cholmod_factor/, /^}/' +_allocate_factor.tex: PATTERN = '/cholmod_factor \*cholmod_allocate_factor/, /\*\) ;/' +_free_factor.tex: PATTERN = '/int cholmod_free_factor/, /\*\) ;/' +_reallocate_factor.tex: PATTERN = '/int cholmod_reallocate_factor/, /\*\) ;/' +_change_factor.tex: PATTERN = '/int cholmod_change_factor/, /\*\) ;/' +_pack_factor.tex: PATTERN = '/int cholmod_pack_factor/, /\*\) ;/' +_reallocate_column.tex: PATTERN = '/int cholmod_reallocate_column/, /\*\) ;/' +_factor_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_factor_to_sparse/, /\*\) ;/' +_copy_factor.tex: PATTERN = '/cholmod_factor \*cholmod_copy_factor/, /\*\) ;/' +_factor_xtype.tex: PATTERN = '/int cholmod_factor_xtype/, /\*\) ;/' +_dense.tex: PATTERN = '/typedef struct cholmod_dense/, /^}/' +_allocate_dense.tex: PATTERN = '/cholmod_dense \*cholmod_allocate_dense/, /\*\) ;/' +_ensure_dense.tex: PATTERN = '/cholmod_dense \*cholmod_ensure_dense/, /\*\) ;/' +_zeros.tex: PATTERN = '/cholmod_dense \*cholmod_zeros/, /\*\) ;/' +_ones.tex: PATTERN = '/cholmod_dense \*cholmod_ones/, /\*\) ;/' +_eye.tex: PATTERN = '/cholmod_dense \*cholmod_eye/, /\*\) ;/' +_free_dense.tex: PATTERN = '/int cholmod_free_dense/, /\*\) ;/' +_sparse_to_dense.tex: PATTERN = '/cholmod_dense \*cholmod_sparse_to_dense/, /\*\) ;/' +_dense_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_dense_to_sparse/, /\*\) ;/' +_copy_dense.tex: PATTERN = '/cholmod_dense \*cholmod_copy_dense/, /\*\) ;/' +_copy_dense2.tex: PATTERN = '/int cholmod_copy_dense2/, /\*\) ;/' +_dense_xtype.tex: PATTERN = '/int cholmod_dense_xtype/, /\*\) ;/' +_triplet.tex: PATTERN = '/typedef struct cholmod_triplet/, /^}/' +_allocate_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_allocate_triplet/, /\*\) ;/' +_free_triplet.tex: PATTERN = '/int cholmod_free_triplet/, /\*\) ;/' +_reallocate_triplet.tex: PATTERN = '/int cholmod_reallocate_triplet/, /\*\) ;/' +_sparse_to_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_sparse_to_triplet/, /\*\) ;/' +_triplet_to_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_triplet_to_sparse/, /\*\) ;/' +_copy_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_copy_triplet/, /\*\) ;/' +_triplet_xtype.tex: PATTERN = '/int cholmod_triplet_xtype/, /\*\) ;/' +_malloc.tex: PATTERN = '/void \*cholmod_malloc/, /\*\) ;/' +_calloc.tex: PATTERN = '/void \*cholmod_calloc/, /\*\) ;/' +_free.tex: PATTERN = '/void \*cholmod_free/, /\*\) ;/' +_realloc.tex: PATTERN = '/void \*cholmod_realloc/, /\*\) ;/' +_realloc_multiple.tex: PATTERN = '/int cholmod_realloc_multiple/, /\*\) ;/' +_version.tex: PATTERN = '/int cholmod_version/, /l_version/' +_defn.tex: PATTERN = '/itype defines the/, /define CHOLMOD_SUPERNODAL/' + +$(PROTO_CORE): $(top_srcdir)/Include/cholmod_core.h header.tex rule.awk footer.tex + $(getproto) + +PROTO_CHECK = \ + _check_common.tex \ + _print_common.tex \ + _check_sparse.tex \ + _print_sparse.tex \ + _check_dense.tex \ + _print_dense.tex \ + _check_factor.tex \ + _print_factor.tex \ + _check_triplet.tex \ + _print_triplet.tex \ + _check_subset.tex \ + _print_subset.tex \ + _check_perm.tex \ + _print_perm.tex \ + _check_parent.tex \ + _print_parent.tex \ + _read_triplet.tex \ + _read_sparse.tex \ + _read_dense.tex \ + _read_matrix.tex \ + _write_sparse.tex \ + _write_dense.tex + +_check_common.tex: PATTERN = '/int cholmod_check_common/, /\*\) ;/' +_print_common.tex: PATTERN = '/int cholmod_print_common/, /\*\) ;/' +_check_sparse.tex: PATTERN = '/int cholmod_check_sparse/, /\*\) ;/' +_print_sparse.tex: PATTERN = '/int cholmod_print_sparse/, /\*\) ;/' +_check_dense.tex: PATTERN = '/int cholmod_check_dense/, /\*\) ;/' +_print_dense.tex: PATTERN = '/int cholmod_print_dense/, /\*\) ;/' +_check_factor.tex: PATTERN = '/int cholmod_check_factor/, /\*\) ;/' +_print_factor.tex: PATTERN = '/int cholmod_print_factor/, /\*\) ;/' +_check_triplet.tex: PATTERN = '/int cholmod_check_triplet/, /\*\) ;/' +_print_triplet.tex: PATTERN = '/int cholmod_print_triplet/, /\*\) ;/' +_check_subset.tex: PATTERN = '/int cholmod_check_subset/, /\*\) ;/' +_print_subset.tex: PATTERN = '/int cholmod_print_subset/, /\*\) ;/' +_check_perm.tex: PATTERN = '/int cholmod_check_perm/, /\*\) ;/' +_print_perm.tex: PATTERN = '/int cholmod_print_perm/, /\*\) ;/' +_check_parent.tex: PATTERN = '/int cholmod_check_parent/, /\*\) ;/' +_print_parent.tex: PATTERN = '/int cholmod_print_parent/, /\*\) ;/' +_read_triplet.tex: PATTERN = '/cholmod_triplet \*cholmod_read_triplet/, /\*\) ;/' +_read_sparse.tex: PATTERN = '/cholmod_sparse \*cholmod_read_sparse/, /\*\) ;/' +_read_dense.tex: PATTERN = '/cholmod_dense \*cholmod_read_dense/, /\*\) ;/' +_read_matrix.tex: PATTERN = '/void \*cholmod_read_matrix/, /\*\) ;/' +_write_sparse.tex: PATTERN = '/int cholmod_write_sparse/, /\*\) ;/' +_write_dense.tex: PATTERN = '/int cholmod_write_dense/, /\*\) ;/' + +$(PROTO_CHECK): $(top_srcdir)/Include/cholmod_check.h header.tex rule.awk footer.tex + $(getproto) + +PROTO_CHOLESKY = \ + _analyze.tex \ + _analyze_p.tex \ + _factorize.tex \ + _factorize_p.tex \ + _solve.tex \ + _solve2.tex \ + _spsolve.tex \ + _etree.tex \ + _rowcolcounts.tex \ + _analyze_ordering.tex \ + _amd.tex \ + _colamd.tex \ + _rowfac.tex \ + _rowfac_mask.tex \ + _row_subtree.tex \ + _row_lsubtree.tex \ + _lsolve_pattern.tex \ + _resymbol.tex \ + _resymbol_noperm.tex \ + _rcond.tex \ + _postorder.tex + +_analyze.tex: PATTERN = '/cholmod_factor \*cholmod_analyze /, /\*\) ;/' +_analyze_p.tex: PATTERN = '/cholmod_factor \*cholmod_analyze_p/, /\*\) ;/' +_factorize.tex: PATTERN = '/int cholmod_factorize /, /\*\) ;/' +_factorize_p.tex: PATTERN = '/int cholmod_factorize_p/, /\*\) ;/' +_solve.tex: PATTERN = '/cholmod_dense \*cholmod_solve/, /\*\) ;/' +_solve2.tex: PATTERN = '/int cholmod_solve2/, /\*\) ;/' +_spsolve.tex: PATTERN = '/cholmod_sparse \*cholmod_spsolve/, /\*\) ;/' +_etree.tex: PATTERN = '/int cholmod_etree/, /\*\) ;/' +_rowcolcounts.tex: PATTERN = '/int cholmod_rowcolcounts/, /\*\) ;/' +_analyze_ordering.tex: PATTERN = '/int cholmod_analyze_ordering/, /\*\) ;/' +_amd.tex: PATTERN = '/int cholmod_amd/, /\*\) ;/' +_colamd.tex: PATTERN = '/int cholmod_colamd/, /\*\) ;/' +_rowfac.tex: PATTERN = '/int cholmod_rowfac/, /\*\) ;/' +_rowfac_mask.tex: PATTERN = '/int cholmod_rowfac_mask/, /\*\) ;/' +_row_subtree.tex: PATTERN = '/int cholmod_row_subtree/, /\*\) ;/' +_row_lsubtree.tex: PATTERN = '/int cholmod_row_lsubtree/, /\*\) ;/' +_lsolve_pattern.tex: PATTERN = '/int cholmod_lsolve_pattern/, /\*\) ;/' +_resymbol.tex: PATTERN = '/int cholmod_resymbol /, /\*\) ;/' +_resymbol_noperm.tex: PATTERN = '/int cholmod_resymbol_noperm/, /\*\) ;/' +_rcond.tex: PATTERN = '/double cholmod_rcond/, /\*\) ;/' +_postorder.tex: PATTERN = '/long cholmod_postorder/, /\*\) ;/' + +$(PROTO_CHOLESKY): $(top_srcdir)/Include/cholmod_cholesky.h header.tex rule.awk footer.tex + $(getproto) + +PROTO_MODIFY = \ + _updown.tex \ + _updown_solve.tex \ + _updown_mark.tex \ + _updown_mask.tex \ + _rowadd.tex \ + _rowadd_solve.tex \ + _rowadd_mark.tex \ + _rowdel.tex \ + _rowdel_solve.tex \ + _rowdel_mark.tex + +_updown.tex: PATTERN = '/int cholmod_updown /, /\*\) ;/' +_updown_solve.tex: PATTERN = '/int cholmod_updown_solve/, /\*\) ;/' +_updown_mark.tex: PATTERN = '/int cholmod_updown_mark/, /\*\) ;/' +_updown_mask.tex: PATTERN = '/int cholmod_updown_mask/, /\*\) ;/' +_rowadd.tex: PATTERN = '/int cholmod_rowadd /, /\*\) ;/' +_rowadd_solve.tex: PATTERN = '/int cholmod_rowadd_solve/, /\*\) ;/' +_rowadd_mark.tex: PATTERN = '/int cholmod_rowadd_mark/, /\*\) ;/' +_rowdel.tex: PATTERN = '/int cholmod_rowdel /, /\*\) ;/' +_rowdel_solve.tex: PATTERN = '/int cholmod_rowdel_solve/, /\*\) ;/' +_rowdel_mark.tex: PATTERN = '/int cholmod_rowdel_mark/, /\*\) ;/' + +$(PROTO_MODIFY): $(top_srcdir)/Include/cholmod_modify.h header.tex rule.awk footer.tex + $(getproto) + +PROTO_MATRIXOPS = \ + _drop.tex \ + _norm_dense.tex \ + _norm_sparse.tex \ + _horzcat.tex \ + _scale.tex \ + _sdmult.tex \ + _ssmult.tex \ + _submatrix.tex \ + _vertcat.tex \ + _symmetry.tex + +_drop.tex: PATTERN = '/int cholmod_drop/, /\*\) ;/' +_norm_dense.tex: PATTERN = '/double cholmod_norm_dense/, /\*\) ;/' +_norm_sparse.tex: PATTERN = '/double cholmod_norm_sparse/, /\*\) ;/' +_horzcat.tex: PATTERN = '/cholmod_sparse \*cholmod_horzcat/, /\*\) ;/' +_scale.tex: PATTERN = '/define CHOLMOD_SCALAR/, /\*\) ;/' +_sdmult.tex: PATTERN = '/int cholmod_sdmult/, /\*\) ;/' +_ssmult.tex: PATTERN = '/cholmod_sparse \*cholmod_ssmult/, /\*\) ;/' +_submatrix.tex: PATTERN = '/cholmod_sparse \*cholmod_submatrix/, /\*\) ;/' +_vertcat.tex: PATTERN = '/cholmod_sparse \*cholmod_vertcat/, /\*\) ;/' +_symmetry.tex: PATTERN = '/int cholmod_symmetry/, /\*\) ;/' + +$(PROTO_MATRIXOPS): $(top_srcdir)/Include/cholmod_matrixops.h header.tex rule.awk footer.tex + $(getproto) + +PROTO_SUPERNODAL = \ + _super_symbolic.tex \ + _super_numeric.tex \ + _super_lsolve.tex \ + _super_ltsolve.tex + +_super_symbolic.tex: PATTERN = '/int cholmod_super_symbolic/, /\*\) ;/' +_super_numeric.tex: PATTERN = '/int cholmod_super_numeric/, /\*\) ;/' +_super_lsolve.tex: PATTERN = '/int cholmod_super_lsolve/, /\*\) ;/' +_super_ltsolve.tex: PATTERN = '/int cholmod_super_ltsolve/, /\*\) ;/' + +$(PROTO_SUPERNODAL): $(top_srcdir)/Include/cholmod_supernodal.h header.tex rule.awk footer.tex + $(getproto) + +PROTO_PARTITION = \ + _nested_dissection.tex \ + _metis.tex \ + _ccolamd.tex \ + _camd.tex \ + _csymamd.tex \ + _bisect.tex \ + _metis_bisector.tex \ + _collapse_septree.tex + +_nested_dissection.tex: PATTERN = '/long cholmod_nested_dissection/, /\*\) ;/' +_metis.tex: PATTERN = '/int cholmod_metis/, /\*\) ;/' +_ccolamd.tex: PATTERN = '/int cholmod_ccolamd/, /\*\) ;/' +_camd.tex: PATTERN = '/int cholmod_camd/, /\*\) ;/' +_csymamd.tex: PATTERN = '/int cholmod_csymamd/, /\*\) ;/' +_bisect.tex: PATTERN = '/long cholmod_bisect/, /\*\) ;/' +_metis_bisector.tex: PATTERN = '/long cholmod_metis_bisector/, /\*\) ;/' +_collapse_septree.tex: PATTERN = '/long cholmod_collapse_septree/, /\*\) ;/' + +$(PROTO_PARTITION): $(top_srcdir)/Include/cholmod_partition.h header.tex rule.awk footer.tex + $(getproto) + +PROTO = \ + $(PROTO_M) \ + $(PROTO_SIMPLE) \ + $(PROTO_CORE) \ + $(PROTO_CHECK) \ + $(PROTO_CHOLESKY) \ + $(PROTO_MODIFY) \ + $(PROTO_MATRIXOPS) \ + $(PROTO_SUPERNODAL) \ + $(PROTO_PARTITION) + +CHOLMOD_UserGuide.pdf CHOLMOD_UserGuide.aux: $(PROTO) +.INTERMEDIATE: CHOLMOD_UserGuide.aux $(PROTO) + +.INTERMEDIATE: CHOLMOD_UserGuide.bib +CHOLMOD_UserGuide.bib: UserGuide.bib + $(LN_S) -f $< $@ + +TEX = TEXINPUTS="$(srcdir):" pdflatex -interaction nonstopmode -file-line-error +BIB = BIBINPUTS="$(srcdir):" bibtex +%.pdf: %.tex %.bbl + $(TEX) $* + while grep -q "Rerun to get cross-references right" $*.log; do \ + $(TEX) $*; \ + done +%.bbl: %.aux %.bib + $(BIB) $* +%.aux: %.tex + $(TEX) $* + +CLEANFILES = _*.awk _*.tex *.dvi *.aux *.log *.lof *.lot *.toc *.bak *.bbl *.blg +MAINTAINERCLEANFILES = $(dist_pdf_DATA) diff --git a/GPU/Makefile.am b/GPU/Makefile.am new file mode 100644 --- /dev/null +++ b/GPU/Makefile.am @@ -0,0 +1,30 @@ +AM_CFLAGS = $(OPENMP_CFLAGS) +AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) + +GPUSRC = \ + cholmod_gpu.c + +EXTRA_DIST = \ + cholmod_gpu_kernels.c \ + cholmod_gpu_kernels.cu + +noinst_HEADERS = \ + t_cholmod_gpu.c + +noinst_LTLIBRARIES = \ + libgpui.la \ + libgpul.la \ + libgpu.la + +libgpui_la_SOURCES = $(GPUSRC) +libgpui_la_LIBADD = $(CODE_COVERAGE_LIBS) +libgpui_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libgpui_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libgpul_la_SOURCES = $(GPUSRC) +libgpul_la_LIBADD = $(CODE_COVERAGE_LIBS) +libgpul_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) -DDLONG +libgpul_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libgpu_la_SOURCES = +libgpu_la_LIBADD = libgpui.la libgpul.la diff --git a/Include/Makefile.am b/Include/Makefile.am new file mode 100644 --- /dev/null +++ b/Include/Makefile.am @@ -0,0 +1,47 @@ +EXTRA_DIST = \ + README.txt + +# Automatically generated headers +nodist_pkginclude_HEADERS = \ + cholmod_config.h + +pkginclude_HEADERS = \ + cholmod.h \ + cholmod_blas.h \ + cholmod_core.h \ + cholmod_function.h \ + cholmod_gpu.h \ + cholmod_io64.h + +noinst_HEADERS = \ + cholmod_complexity.h \ + cholmod_gpu_kernels.h \ + cholmod_internal.h \ + cholmod_template.h + +if MOD_CHECK +pkginclude_HEADERS += cholmod_check.h +endif + +if MOD_CHOLESKY +pkginclude_HEADERS += cholmod_cholesky.h +endif + +if MOD_PARTITION +pkginclude_HEADERS += cholmod_camd.h +if MOD_PARTITION_METIS +pkginclude_HEADERS += cholmod_partition.h +endif +endif + +if MOD_MATRIXOPS +pkginclude_HEADERS += cholmod_matrixops.h +endif + +if MOD_MODIFY +pkginclude_HEADERS += cholmod_modify.h +endif + +if MOD_SUPERNODAL +pkginclude_HEADERS += cholmod_supernodal.h +endif diff --git a/Include/cholmod_config.h b/Include/cholmod_config.h.in rename from Include/cholmod_config.h rename to Include/cholmod_config.h.in --- a/Include/cholmod_config.h +++ b/Include/cholmod_config.h.in @@ -45,16 +45,28 @@ /* Use the compiler flag, or uncomment the definition(s), if you want to use * one or more non-default installation options: */ -/* -#define NCHECK -#define NCHOLESKY -#define NCAMD -#define NPARTITION +/* Define to disable the Check module */ +#undef NCHECK -#define NMATRIXOPS -#define NMODIFY -#define NSUPERNODAL +/* Define to disable the Cholesky module */ +#undef NCHOLESKY + +/* Define to disable the Partition module */ +#undef NCAMD + +/* Define to disable METIS support in the Partition module */ +#undef NPARTITION +/* Define to disable the MatrixOps module */ +#undef NMATRIXOPS + +/* Define to disable the Modify module */ +#undef NMODIFY + +/* Define to disable the Supernodal module */ +#undef NSUPERNODAL + +/* #define NPRINT #define LONGBLAS long @@ -62,6 +74,9 @@ #define NSUNPERF */ +/* Define to disable GPL-licensed modules */ +#undef NGPL + /* The option disables the MatrixOps, Modify, and Supernodal modules. The existence of this #define here, and its use in these 3 modules, does not affect the license itself; see CHOLMOD/Doc/License.txt for your actual diff --git a/MATLAB/Makefile.am b/MATLAB/Makefile.am new file mode 100644 --- /dev/null +++ b/MATLAB/Makefile.am @@ -0,0 +1,26 @@ +# Needed by Doc/Makefile.am +EXTRA_DIST = \ + analyze.m \ + bisect.m \ + chol2.m \ + cholmod2.m \ + cholmod_demo.m \ + cholmod_make.m \ + etree2.m \ + graph_demo.m \ + lchol.m \ + ldl_normest.m \ + ldlchol.m \ + ldlsolve.m \ + ldlsplit.m \ + ldlupdate.m \ + ldlrowmod.m \ + metis.m \ + mread.m \ + mwrite.m \ + nesdis.m \ + resymbol.m \ + sdmult.m \ + sparse2.m \ + spsym.m \ + symbfact2.m diff --git a/Makefile.am b/Makefile.am new file mode 100644 --- /dev/null +++ b/Makefile.am @@ -0,0 +1,52 @@ +ACLOCAL_AMFLAGS = -I m4 + +SUBDIRS = Include Core +EXTRA_DIST = README.txt + +pkgconfig_DATA = cholmod.pc + +lib_LTLIBRARIES = libcholmod.la + +libcholmod_la_SOURCES = +libcholmod_la_LIBADD = $(top_builddir)/Core/libcore.la +libcholmod_la_LDFLAGS = -no-undefined -release $(PACKAGE_VERSION) + +if MOD_CHECK +SUBDIRS += Check +libcholmod_la_LIBADD += $(top_builddir)/Check/libcheck.la +endif + +if MOD_CHOLESKY +SUBDIRS += Cholesky +libcholmod_la_LIBADD += $(top_builddir)/Cholesky/libcholesky.la +endif + +if MOD_PARTITION +SUBDIRS += Partition +libcholmod_la_LIBADD += $(top_builddir)/Partition/libpartition.la +endif + +if MOD_MATRIXOPS +SUBDIRS += MatrixOps +libcholmod_la_LIBADD += $(top_builddir)/MatrixOps/libmatrixops.la +endif + +if MOD_MODIFY +SUBDIRS += Modify +libcholmod_la_LIBADD += $(top_builddir)/Modify/libmodify.la +endif + +if MOD_SUPERNODAL +SUBDIRS += Supernodal +libcholmod_la_LIBADD += $(top_builddir)/Supernodal/libsupernodal.la +endif + +if MOD_GPU +SUBDIRS += GPU +libcholmod_la_LIBADD += $(top_builddir)/GPU/libgpu.la +endif + +SUBDIRS += . MATLAB Demo Tcov Doc + +CODE_COVERAGE_BRANCH_COVERAGE = 1 +@CODE_COVERAGE_RULES@ diff --git a/MatrixOps/Makefile.am b/MatrixOps/Makefile.am new file mode 100644 --- /dev/null +++ b/MatrixOps/Makefile.am @@ -0,0 +1,36 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + gpl.txt + +MATRIXOPSSRC = \ + cholmod_drop.c \ + cholmod_horzcat.c \ + cholmod_norm.c \ + cholmod_scale.c \ + cholmod_sdmult.c \ + cholmod_ssmult.c \ + cholmod_submatrix.c \ + cholmod_symmetry.c \ + cholmod_vertcat.c + +noinst_HEADERS = \ + t_cholmod_sdmult.c + +noinst_LTLIBRARIES = \ + libmatrixopsi.la \ + libmatrixopsl.la \ + libmatrixops.la + +libmatrixopsi_la_SOURCES = $(MATRIXOPSSRC) +libmatrixopsi_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libmatrixopsi_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libmatrixopsi_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libmatrixopsl_la_SOURCES = $(MATRIXOPSSRC) +libmatrixopsl_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libmatrixopsl_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) -DDLONG +libmatrixopsl_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libmatrixops_la_SOURCES = +libmatrixops_la_LIBADD = libmatrixopsi.la libmatrixopsl.la diff --git a/Modify/Makefile.am b/Modify/Makefile.am new file mode 100644 --- /dev/null +++ b/Modify/Makefile.am @@ -0,0 +1,31 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + gpl.txt + +MODIFYSRC = \ + cholmod_rowadd.c \ + cholmod_rowdel.c \ + cholmod_updown.c + +noinst_HEADERS = \ + t_cholmod_updown.c \ + t_cholmod_updown_numkr.c + +noinst_LTLIBRARIES = \ + libmodifyi.la \ + libmodifyl.la \ + libmodify.la + +libmodifyi_la_SOURCES = $(MODIFYSRC) +libmodifyi_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libmodifyi_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libmodifyi_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libmodifyl_la_SOURCES = $(MODIFYSRC) +libmodifyl_la_LIBADD = $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libmodifyl_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) -DDLONG +libmodifyl_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libmodify_la_SOURCES = +libmodify_la_LIBADD = libmodifyi.la libmodifyl.la diff --git a/Partition/Makefile.am b/Partition/Makefile.am new file mode 100644 --- /dev/null +++ b/Partition/Makefile.am @@ -0,0 +1,35 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(METIS_CFLAGS) $(CCOLAMD_CFLAGS) $(CAMD_CFLAGS) $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + lesser.txt + +PARTITIONSRC = \ + cholmod_camd.c \ + cholmod_ccolamd.c \ + cholmod_csymamd.c +METISSRC = \ + cholmod_metis.c \ + cholmod_nesdis.c + +noinst_LTLIBRARIES = \ + libpartitioni.la \ + libpartitionl.la \ + libpartition.la + +libpartitioni_la_SOURCES = $(PARTITIONSRC) +libpartitioni_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libpartitioni_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libpartitioni_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libpartitionl_la_SOURCES = $(PARTITIONSRC) +libpartitionl_la_LIBADD = $(METIS_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) $(SUITESPARSECONFIG_LIBS) -lm $(CODE_COVERAGE_LIBS) +libpartitionl_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) -DDLONG +libpartitionl_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +if MOD_PARTITION_METIS +libpartitioni_la_SOURCES += $(METISSRC) +libpartitionl_la_SOURCES += $(METISSRC) +endif + +libpartition_la_SOURCES = +libpartition_la_LIBADD = libpartitioni.la libpartitionl.la diff --git a/Supernodal/Makefile.am b/Supernodal/Makefile.am new file mode 100644 --- /dev/null +++ b/Supernodal/Makefile.am @@ -0,0 +1,37 @@ +AM_CFLAGS = $(OPENMP_CFLAGS) +AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + gpl.txt + +SUPERNODALSRC = \ + cholmod_super_numeric.c \ + cholmod_super_solve.c \ + cholmod_super_symbolic.c + +noinst_HEADERS = \ + t_cholmod_super_numeric.c \ + t_cholmod_super_solve.c + +noinst_LTLIBRARIES = \ + libsupernodali.la \ + libsupernodall.la \ + libsupernodal.la + +libsupernodali_la_SOURCES = $(SUPERNODALSRC) +libsupernodali_la_LIBADD = $(LAPACK_LIBS) $(BLAS_LIBS) $(SUITESPARSECONFIG_LIBS) $(CODE_COVERAGE_LIBS) +libsupernodali_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) +libsupernodali_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +libsupernodall_la_SOURCES = $(SUPERNODALSRC) +libsupernodall_la_LIBADD = $(LAPACK_LIBS) $(BLAS_LIBS) $(SUITESPARSECONFIG_LIBS) $(CODE_COVERAGE_LIBS) +libsupernodall_la_CPPFLAGS = $(AM_CPPFLAGS) $(CODE_COVERAGE_CPPFLAGS) -DDLONG +libsupernodall_la_CFLAGS = $(AM_CFLAGS) $(CODE_COVERAGE_CFLAGS) + +if !TIMING +libsupernodali_la_CPPFLAGS += -DNTIMER +libsupernodall_la_CPPFLAGS += -DNTIMER +endif + +libsupernodal_la_SOURCES = +libsupernodal_la_LIBADD = libsupernodali.la libsupernodall.la diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am new file mode 100644 --- /dev/null +++ b/Tcov/Makefile.am @@ -0,0 +1,330 @@ +AM_CPPFLAGS = -I$(top_srcdir)/Include $(SUITESPARSECONFIG_CFLAGS) + +EXTRA_DIST = \ + README.txt \ + gpl.txt + +dist_noinst_DATA = \ + comments.txt \ + Matrix/0 \ + Matrix/0_1 \ + Matrix/1_0 \ + Matrix/1e99 \ + Matrix/2.tri \ + Matrix/20lo \ + Matrix/2diag.tri \ + Matrix/2lo.tri \ + Matrix/2up.tri \ + Matrix/3_2 \ + Matrix/3b \ + Matrix/3by0.mtx \ + Matrix/3singular \ + Matrix/5by50 \ + Matrix/C9840 \ + Matrix/afiro \ + Matrix/c10 \ + Matrix/c30lo \ + Matrix/c30up \ + Matrix/c3singular \ + Matrix/c5lo \ + Matrix/c5up2 \ + Matrix/cha.mtx \ + Matrix/cpi \ + Matrix/crud1 \ + Matrix/crud2 \ + Matrix/cs.mtx \ + Matrix/csa.mtx \ + Matrix/cza \ + Matrix/cza.mtx \ + Matrix/diag \ + Matrix/ex5lo \ + Matrix/fullcha.mtx \ + Matrix/fullcrud.mtx \ + Matrix/fullcrud1.mtx \ + Matrix/fullcrud2.mtx \ + Matrix/fullcsa.mtx \ + Matrix/fullcza.mtx \ + Matrix/fullrsa.mtx \ + Matrix/fullrza.mtx \ + Matrix/galenet \ + Matrix/huge.tri \ + Matrix/ibm32 \ + Matrix/k01up \ + Matrix/one \ + Matrix/pi \ + Matrix/plskz362.mtx \ + Matrix/r5lo \ + Matrix/r5lo2 \ + Matrix/r5up \ + Matrix/r5up2 \ + Matrix/rza.mtx \ + Matrix/z10 \ + Matrix/z30lo \ + Matrix/z30up \ + Matrix/z3singular \ + Matrix/z5lo \ + Matrix/z5up \ + Matrix/z5up2 \ + Matrix/zero + +TEST = \ + amdtest.c \ + aug.c \ + camdtest.c \ + cctest.c \ + cm.c \ + cm.h \ + ctest.c \ + huge.c \ + lpdemo.c \ + memory.c \ + null.c \ + null2.c \ + raw_factor.c \ + solve.c \ + test_ops.c \ + unpack.c + +if MOD_CHECK +if MOD_CHOLESKY +if MOD_PARTITION +if MOD_MATRIXOPS +if MOD_MODIFY +if MOD_SUPERNODAL +if CODE_COVERAGE_ENABLED + +check_PROGRAMS = \ + cm \ + cl \ + cmread \ + clread + +cm_SOURCES = $(TEST) +cm_LDADD = $(top_builddir)/libcholmod.la $(COLAMD_LIBS) $(AMD_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) $(BLAS_LIBS) $(SUITESPARSECONFIG_LIBS) +cm_CPPFLAGS = $(AM_CPPFLAGS) $(COLAMD_CFLAGS) $(AMD_CFLAGS) $(CCOLAMD_CFLAGS) $(CAMD_CFLAGS) + +cl_SOURCES = $(TEST) +cl_LDADD = $(top_builddir)/libcholmod.la $(COLAMD_LIBS) $(AMD_LIBS) $(CCOLAMD_LIBS) $(CAMD_LIBS) $(BLAS_LIBS) $(SUITESPARSECONFIG_LIBS) +cl_CPPFLAGS = $(AM_CPPFLAGS) $(COLAMD_CFLAGS) $(AMD_CFLAGS) $(CCOLAMD_CFLAGS) $(CAMD_CFLAGS) -DDLONG + +cmread_SOURCES = cmread.c +cmread_LDADD = $(top_builddir)/libcholmod.la + +clread_SOURCES = cmread.c +clread_LDADD = $(top_builddir)/libcholmod.la +clread_CPPFLAGS = $(AM_CPPFLAGS) -DDLONG + +MATRICES = \ + $(srcdir)/Matrix/0 \ + $(srcdir)/Matrix/0_1 \ + $(srcdir)/Matrix/1_0 \ + $(srcdir)/Matrix/1e99 \ + $(srcdir)/Matrix/2.tri \ + $(srcdir)/Matrix/20lo \ + $(srcdir)/Matrix/2diag.tri \ + $(srcdir)/Matrix/2lo.tri \ + $(srcdir)/Matrix/2up.tri \ + $(srcdir)/Matrix/3b \ + $(srcdir)/Matrix/3by0.mtx \ + $(srcdir)/Matrix/3singular \ + $(srcdir)/Matrix/5by50 \ + $(srcdir)/Matrix/C9840 \ + $(srcdir)/Matrix/afiro \ + $(srcdir)/Matrix/c10 \ + $(srcdir)/Matrix/c30lo \ + $(srcdir)/Matrix/c30up \ + $(srcdir)/Matrix/c3singular \ + $(srcdir)/Matrix/c5lo \ + $(srcdir)/Matrix/c5up2 \ + $(srcdir)/Matrix/cha.mtx \ + $(srcdir)/Matrix/cpi \ + $(srcdir)/Matrix/crud1 \ + $(srcdir)/Matrix/crud2 \ + $(srcdir)/Matrix/cs.mtx \ + $(srcdir)/Matrix/csa.mtx \ + $(srcdir)/Matrix/cza \ + $(srcdir)/Matrix/cza.mtx \ + $(srcdir)/Matrix/diag \ + $(srcdir)/Matrix/ex5lo \ + $(srcdir)/Matrix/fullcha.mtx \ + $(srcdir)/Matrix/fullcrud.mtx \ + $(srcdir)/Matrix/fullcrud1.mtx \ + $(srcdir)/Matrix/fullcrud2.mtx \ + $(srcdir)/Matrix/fullcsa.mtx \ + $(srcdir)/Matrix/fullcza.mtx \ + $(srcdir)/Matrix/fullrsa.mtx \ + $(srcdir)/Matrix/fullrza.mtx \ + $(srcdir)/Matrix/galenet \ + $(srcdir)/Matrix/huge.tri \ + $(srcdir)/Matrix/ibm32 \ + $(srcdir)/Matrix/k01up \ + $(srcdir)/Matrix/one \ + $(srcdir)/Matrix/pi \ + $(srcdir)/Matrix/plskz362.mtx \ + $(srcdir)/Matrix/r5lo \ + $(srcdir)/Matrix/r5lo2 \ + $(srcdir)/Matrix/r5up \ + $(srcdir)/Matrix/r5up2 \ + $(srcdir)/Matrix/rza.mtx \ + $(srcdir)/Matrix/z10 \ + $(srcdir)/Matrix/z30lo \ + $(srcdir)/Matrix/z30up \ + $(srcdir)/Matrix/z3singular \ + $(srcdir)/Matrix/z5lo \ + $(srcdir)/Matrix/z5up \ + $(srcdir)/Matrix/z5up2 \ + $(srcdir)/Matrix/zero \ + $(top_srcdir)/Demo/Matrix/empty.tri \ + $(top_srcdir)/Demo/Matrix/mangle5.tri \ + $(top_srcdir)/Demo/Matrix/mangle6.tri \ + $(top_srcdir)/Demo/Matrix/mangle7.tri \ + $(top_srcdir)/Demo/Matrix/mangle8.tri \ + $(top_srcdir)/Demo/Matrix/one.tri + +check-local: $(check_PROGRAMS) $(MATRICES) + ./cmread no_such_file > no_such_file.out + ./cmread $(srcdir)/Matrix/crud1 > crud1.out + ./cmread $(srcdir)/Matrix/crud2 > crud2.out + ./cmread $(srcdir)/Matrix/fullcrud.mtx > fullcrud.out + ./cmread $(srcdir)/Matrix/fullcrud1.mtx > fullcrud1.out + ./cmread $(srcdir)/Matrix/fullcrud2.mtx > fullcrud2.out + ./cmread $(srcdir)/Matrix/3by0.mtx > 3by0.out + ./cmread $(srcdir)/Matrix/fullrza.mtx > fullrza.out + ./cmread $(srcdir)/Matrix/fullrsa.mtx > fullrsa.out + ./cmread $(srcdir)/Matrix/fullcsa.mtx > fullcsa.out + ./cmread $(srcdir)/Matrix/fullcza.mtx > fullcza.out + ./cmread $(srcdir)/Matrix/fullcha.mtx > fullcha.out + ./cmread $(srcdir)/Matrix/cha.mtx > cha.out + ./cmread $(srcdir)/Matrix/cza.mtx > cza.out + ./cmread $(srcdir)/Matrix/csa.mtx > csa.out + ./cmread $(srcdir)/Matrix/one > one.out + ./cmread $(srcdir)/Matrix/rza.mtx > rza.out + ./cmread $(top_srcdir)/Demo/Matrix/mangle5.tri > mangle5.out + ./cmread $(top_srcdir)/Demo/Matrix/mangle6.tri > mangle6.out + ./cmread $(top_srcdir)/Demo/Matrix/mangle7.tri > mangle6.out + ./cmread $(top_srcdir)/Demo/Matrix/mangle8.tri > mangle8.out + ./cmread $(top_srcdir)/Demo/Matrix/empty.tri > empty.out + ./cmread $(top_srcdir)/Demo/Matrix/one.tri > one.out + ./cmread $(srcdir)/Matrix/plskz362.mtx > plskz363.out + ./cmread $(srcdir)/Matrix/2diag.tri > 2diag.out + ./cmread $(srcdir)/Matrix/r5lo > r5lo.out + ./cmread $(srcdir)/Matrix/r5lo2 > r5lo2.out + ./cmread $(srcdir)/Matrix/cs.mtx > cs.out + ./cmread $(srcdir)/Matrix/2lo.tri > 2lo.out + ./cmread $(srcdir)/Matrix/2.tri > 2.out + ./cmread $(srcdir)/Matrix/2up.tri > 2up.out + ./cmread $(srcdir)/Matrix/huge.tri > huge.out + ./cmread $(srcdir)/Matrix/1e99 > 1e99.out + ./clread no_such_file > l_no_such_file.out + ./clread $(srcdir)/Matrix/crud1 > l_crud1.out + ./clread $(srcdir)/Matrix/crud2 > l_crud2.out + ./clread $(srcdir)/Matrix/fullcrud.mtx > l_fullcrud.out + ./clread $(srcdir)/Matrix/fullcrud1.mtx > l_fullcrud1.out + ./clread $(srcdir)/Matrix/fullcrud2.mtx > l_fullcrud2.out + ./clread $(srcdir)/Matrix/3by0.mtx > l_3by0.out + ./clread $(srcdir)/Matrix/fullrza.mtx > l_fullrza.out + ./clread $(srcdir)/Matrix/fullrsa.mtx > l_fullrsa.out + ./clread $(srcdir)/Matrix/fullcsa.mtx > l_fullcsa.out + ./clread $(srcdir)/Matrix/fullcza.mtx > l_fullcza.out + ./clread $(srcdir)/Matrix/fullcha.mtx > l_fullcha.out + ./clread $(srcdir)/Matrix/cha.mtx > l_cha.out + ./clread $(srcdir)/Matrix/cza.mtx > l_cza.out + ./clread $(srcdir)/Matrix/csa.mtx > l_csa.out + ./clread $(srcdir)/Matrix/one > l_one.out + ./clread $(srcdir)/Matrix/rza.mtx > l_rza.out + ./clread $(top_srcdir)/Demo/Matrix/mangle5.tri > l_mangle5.out + ./clread $(top_srcdir)/Demo/Matrix/mangle6.tri > l_mangle6.out + ./clread $(top_srcdir)/Demo/Matrix/mangle7.tri > l_mangle6.out + ./clread $(top_srcdir)/Demo/Matrix/mangle8.tri > l_mangle8.out + ./clread $(top_srcdir)/Demo/Matrix/empty.tri > l_empty.out + ./clread $(top_srcdir)/Demo/Matrix/one.tri > l_one.out + ./clread $(srcdir)/Matrix/plskz362.mtx > l_plskz363.out + ./clread $(srcdir)/Matrix/2diag.tri > l_2diag.out + ./clread $(srcdir)/Matrix/r5lo > l_r5lo.out + ./clread $(srcdir)/Matrix/r5lo2 > l_r5lo2.out + ./clread $(srcdir)/Matrix/cs.mtx > l_cs.out + ./clread $(srcdir)/Matrix/2lo.tri > l_l_2lo.out + ./clread $(srcdir)/Matrix/2.tri > l_2.out + ./clread $(srcdir)/Matrix/2up.tri > l_2up.out + ./clread $(srcdir)/Matrix/huge.tri > l_huge.out + ./clread $(srcdir)/Matrix/1e99 > l_1e99.out + ./cm < $(srcdir)/Matrix/galenet > galenet.out + ./cl < $(srcdir)/Matrix/galenet > l_galenet.out + ./cm < $(srcdir)/Matrix/5by50 > 5by50.out + ./cl < $(srcdir)/Matrix/5by50 > l_5by50.out + ./cm < $(srcdir)/Matrix/r5lo > r5lo.out + ./cl < $(srcdir)/Matrix/r5lo > l_r5lo.out + ./cm < $(srcdir)/Matrix/r5up > r5up.out + ./cl < $(srcdir)/Matrix/r5up > l_r5up.out + ./cm < $(srcdir)/Matrix/r5up2 > r5up2.out + ./cl < $(srcdir)/Matrix/r5up2 > l_r5up2.out + ./cm < $(srcdir)/Matrix/c5up2 > c5up2.out + ./cl < $(srcdir)/Matrix/c5up2 > l_c5up2.out + ./cm < $(srcdir)/Matrix/z5up2 > z5up2.out + ./cl < $(srcdir)/Matrix/z5up2 > l_z5up2.out + ./cm -m < $(srcdir)/Matrix/z5lo > z5lo.out + ./cl -m < $(srcdir)/Matrix/z5lo > l_z5lo.out + ./cm < $(srcdir)/Matrix/ibm32 > ibm.out + ./cl < $(srcdir)/Matrix/ibm32 > l_ibm.out + ./cm -m < $(srcdir)/Matrix/c5lo > c5lo.out + ./cl -m < $(srcdir)/Matrix/c5lo > l_c5lo.out + ./cm -m < $(srcdir)/Matrix/z10 > z10.out + ./cl -m < $(srcdir)/Matrix/z10 > l_z10.out + ./cm -m < $(srcdir)/Matrix/z5up > z5up.out + ./cl -m < $(srcdir)/Matrix/z5up > l_z5up.out + ./cm -s < $(srcdir)/Matrix/3singular > 3singular.out + ./cl -s < $(srcdir)/Matrix/3singular > l_3singular.out + ./cm -s < $(srcdir)/Matrix/z3singular > z3singular.out + ./cl -s < $(srcdir)/Matrix/z3singular > l_z3singular.out + ./cm -s < $(srcdir)/Matrix/c3singular > c3singular.out + ./cl -s < $(srcdir)/Matrix/c3singular > l_c3singular.out + ./cm -m < $(srcdir)/Matrix/0 > 0.out + ./cl -m < $(srcdir)/Matrix/0 > l_0.out + ./cm -m < $(srcdir)/Matrix/afiro > afiro.out + ./cl -m < $(srcdir)/Matrix/afiro > l_afiro.out + ./cm -m < $(srcdir)/Matrix/k01up > k01up.out + ./cl -m < $(srcdir)/Matrix/k01up > l_k01up.out + ./cm < $(srcdir)/Matrix/diag > diag.out + ./cl < $(srcdir)/Matrix/diag > l_diag.out + ./cm -m < $(srcdir)/Matrix/ex5lo > ex5lo.out + ./cl -m < $(srcdir)/Matrix/ex5lo > l_ex5lo.out + ./cm < $(srcdir)/Matrix/20lo > 20lo.out + ./cl < $(srcdir)/Matrix/20lo > l_20lo.out + ./cm < $(srcdir)/Matrix/z30lo > z30lo.out + ./cl < $(srcdir)/Matrix/z30lo > l_z30lo.out + ./cm -m < $(srcdir)/Matrix/z30up > z30up.out + ./cl -m < $(srcdir)/Matrix/z30up > l_z30up.out + ./cm < $(srcdir)/Matrix/c10 > c10.out + ./cl < $(srcdir)/Matrix/c10 > l_c10.out + ./cm < $(srcdir)/Matrix/c30lo > c30lo.out + ./cl < $(srcdir)/Matrix/c30lo > l_c30lo.out + ./cm < $(srcdir)/Matrix/C9840 > C9840.out + ./cl < $(srcdir)/Matrix/C9840 > l_C9840.out + ./cm -m < $(srcdir)/Matrix/c30up > c30up.out + ./cl -m < $(srcdir)/Matrix/c30up > l_c30up.out + ./cm < $(srcdir)/Matrix/pi > pi.out + ./cl < $(srcdir)/Matrix/pi > l_pi.out + ./cm < $(srcdir)/Matrix/cpi > cpi.out + ./cl < $(srcdir)/Matrix/cpi > l_cpi.out + ./cm < $(srcdir)/Matrix/1_0 > 1_0.out + ./cl < $(srcdir)/Matrix/1_0 > l_1_0.out + ./cm -s < $(srcdir)/Matrix/3b > 3b.out + ./cl -s < $(srcdir)/Matrix/3b > l_3b.out + ./cm -s < $(srcdir)/Matrix/cza > cza2.out + ./cl -s < $(srcdir)/Matrix/cza > l_cza2.out + ./cm < $(srcdir)/Matrix/0_1 > 0_1.out + ./cl < $(srcdir)/Matrix/0_1 > l_0_1.out + ./cm -n < $(srcdir)/Matrix/galenet > galenet_nan.out + ./cl -n < $(srcdir)/Matrix/galenet > l_galenet_nan.out + ./cm < $(srcdir)/Matrix/zero > zero.out + ./cl < $(srcdir)/Matrix/zero > zero.out + +endif +endif +endif +endif +endif +endif +endif + +CLEANFILES = temp*.mtx *.out diff --git a/cholmod.pc.in b/cholmod.pc.in new file mode 100644 --- /dev/null +++ b/cholmod.pc.in @@ -0,0 +1,13 @@ +prefix=@prefix@ +exec_prefix=@exec_prefix@ +libdir=@libdir@ +includedir=@includedir@ + +Name: @PACKAGE_NAME@ +Description: Sparse Cholesky factorization +Version: @PACKAGE_VERSION@ +URL: @PACKAGE_URL@ +Requires.private: @CHOLMOD_REQUIRES@ +Libs: -L${libdir} -lcholmod +Libs.private: @LAPACK_LIBS@ @BLAS_LIBS@ -lm +Cflags: -I${includedir}/cholmod diff --git a/configure.ac b/configure.ac new file mode 100644 --- /dev/null +++ b/configure.ac @@ -0,0 +1,221 @@ +# -*- Autoconf -*- +# Process this file with autoconf to produce a configure script. + +AC_PREREQ([2.69]) +AC_INIT([CHOLMOD],[3.0.14],[https://github.com/DrTimothyAldenDavis/SuiteSparse],[cholmod],[http://www.suitesparse.com/]) +AC_CONFIG_SRCDIR([Core/cholmod_common.c]) +AC_CONFIG_AUX_DIR([build-aux]) +AC_CONFIG_MACRO_DIR([m4]) +AC_CONFIG_HEADERS([config.h Include/cholmod_config.h]) +AM_INIT_AUTOMAKE([foreign]) +AM_SILENT_RULES([yes]) +LT_INIT([disable-static]) + +# Checks for programs. +PKG_PROG_PKG_CONFIG +AC_PROG_INSTALL +AC_PROG_CC +AC_PROG_F77 +AC_PROG_AWK +AC_OPENMP +AX_CODE_COVERAGE + +AC_ARG_ENABLE([mod-check], + [AS_HELP_STRING( + [--disable-mod-check], + [do not build the Check module])], + [], + [AS_VAR_SET([enable_mod_check], [yes])]) + +AC_ARG_ENABLE([mod-cholesky], + [AS_HELP_STRING( + [--disable-mod-cholesky], + [do not build the Cholesky module])], + [], + [AS_VAR_SET([enable_mod_cholesky], [yes])]) + +AC_ARG_ENABLE([mod-partition], + [AS_HELP_STRING( + [--disable-mod-partition], + [do not build the Partition module])], + [], + [AS_VAR_SET([enable_mod_partition], [yes])]) + +AC_ARG_ENABLE([mod-matrixops], + [AS_HELP_STRING( + [--disable-mod-matrixops], + [do not build the MatrixOps module])], + [], + [AS_VAR_SET([enable_mod_matrixops], [yes])]) + +AC_ARG_ENABLE([mod-modify], + [AS_HELP_STRING( + [--disable-mod-modify], + [do not build the Modify module])], + [], + [AS_VAR_SET([enable_mod_modify], [yes])]) + +AC_ARG_ENABLE([mod-supernodal], + [AS_HELP_STRING( + [--disable-mod-supernodal], + [do not build the Supernodal module])], + [], + [AS_VAR_SET([enable_mod_supernodal], [yes])]) + +AC_ARG_ENABLE([gpl-modules], + [AS_HELP_STRING( + [--disable-gpl-modules], + [do not build GPL-licensed modules])], + [], + [AS_VAR_SET([enable_gpl_modules], [yes])]) + +AC_ARG_ENABLE([timing], + [AS_HELP_STRING( + [--disable-timing], + [do not use timing routines])], + [], + [AS_VAR_SET([enable_timing], [yes])]) + +AS_VAR_SET([LIBS_SAVED], [$LIBS]) + +# Checks for libraries. +AC_CHECK_LIB([m], [sqrt]) + +PKG_CHECK_MODULES([SUITESPARSECONFIG], [suitesparseconfig]) +AS_VAR_SET([CHOLMOD_REQUIRES], ["suitesparseconfig"]) + +AS_IF([test "x$enable_gpl_modules" != "xyes"], [ + AC_DEFINE([NGPL], [], [Define to disable GPL-licensed modules]) + AS_VAR_SET([enable_mod_matrixops], [no]) + AS_VAR_SET([enable_mod_modify], [no]) + AS_VAR_SET([enable_mod_supernodal], [no]) +]) + +AS_IF([test "x$enable_mod_check" != "xyes"], [ + AC_DEFINE([NCHECK], [], [Define to disable the Check module]) +]) + +AS_IF([test "x$enable_mod_cholesky" != "xyes"], [ + AC_DEFINE([NCHOLESKY], [], [Define to disable the Cholesky module]) +], [ + PKG_CHECK_MODULES([AMD], [amd], + [AS_VAR_APPEND([CHOLMOD_REQUIRES], [" amd"])], + [AC_MSG_ERROR([$AMD_PKG_ERRORS (required by mod-cholesky)])]) + + PKG_CHECK_MODULES([COLAMD], [colamd], + [AS_VAR_APPEND([CHOLMOD_REQUIRES], [" colamd"])], + [AC_MSG_ERROR([$COLAMD_PKG_ERRORS (required by mod-cholesky)])]) +]) + +AS_IF([test "x$enable_mod_partition" != "xyes"], [ + AC_DEFINE([NCAMD], [], [Define to disable the Partition module]) +], [ + PKG_CHECK_MODULES([CAMD], [camd], + [AS_VAR_APPEND([CHOLMOD_REQUIRES], [" camd"])], + [AC_MSG_ERROR([$CAMD_PKG_ERRORS (required by mod-partition)])]) + + PKG_CHECK_MODULES([CCOLAMD], [ccolamd], + [AS_VAR_APPEND([CHOLMOD_REQUIRES], [" ccolamd"])], + [AC_MSG_ERROR([$CCOLAMD_PKG_ERRORS (required by mod-partition)])]) + + PKG_CHECK_MODULES([METIS], [metis >= 5.1.0], + [AS_VAR_SET([have_metis], [yes]) + AS_VAR_APPEND([CHOLMOD_REQUIRES], [" metis >= 5.1.0"])], + [AS_VAR_SET([have_metis], [no]) + AC_MSG_WARN([$METIS_PKG_ERRORS (used by mod-partition), disabling some functionality])]) +]) + +AS_IF([test "x$have_metis" != "xyes"], [ + AC_DEFINE([NPARTITION], [], [Define to disable METIS support in the Partition module]) +]) + +AS_IF([test "x$enable_mod_matrixops" != "xyes"], [ + AC_DEFINE([NMATRIXOPS], [], [Define to disable the MatrixOps module]) +]) + +AS_IF([test "x$enable_mod_modify" != "xyes"], [ + AC_DEFINE([NMODIFY], [], [Define to disable the Modify module]) +]) + +AS_IF([test "x$enable_mod_supernodal" != "xyes"], [ + AC_DEFINE([NSUPERNODAL], [], [Define to disable the Supernodal module]) +], [ + AX_BLAS( + [], + [AC_MSG_ERROR([cannot find BLAS (required by mod-supernodal)])]) + + AX_LAPACK( + [], + [AC_MSG_ERROR([cannot find LAPACK (required by mod-supernodal)])]) +]) + +# Checks for header files. +AC_CHECK_HEADERS([float.h limits.h stddef.h stdlib.h string.h]) + +# Checks for typedefs, structures, and compiler characteristics. +AC_TYPE_SIZE_T + +# Checks for library functions. +AC_FUNC_MALLOC +AC_CHECK_FUNCS([sqrt]) + +AS_VAR_SET([LIBS], [$LIBS_SAVED]) + +AC_MSG_CHECKING([whether to build mod-check]) +AC_MSG_RESULT([$enable_mod_check]) +AM_CONDITIONAL([MOD_CHECK], [test "x$enable_mod_check" = "xyes"]) + +AC_MSG_CHECKING([whether to build mod-cholesky]) +AC_MSG_RESULT([$enable_mod_cholesky]) +AM_CONDITIONAL([MOD_CHOLESKY], [test "x$enable_mod_cholesky" = "xyes"]) + +AC_MSG_CHECKING([whether to build mod-partition]) +AC_MSG_RESULT([$enable_mod_partition]) +AM_CONDITIONAL([MOD_PARTITION], [test "x$enable_mod_partition" = "xyes"]) + +AC_MSG_CHECKING([whether to build mod-partition with METIS]) +AC_MSG_RESULT([$have_metis]) +AM_CONDITIONAL([MOD_PARTITION_METIS], [test "x$have_metis" = "xyes"]) + +AC_MSG_CHECKING([whether to build mod-matrixops]) +AC_MSG_RESULT([$enable_mod_matrixops]) +AM_CONDITIONAL([MOD_MATRIXOPS], [test "x$enable_mod_matrixops" = "xyes"]) + +AC_MSG_CHECKING([whether to build mod-modify]) +AC_MSG_RESULT([$enable_mod_modify]) +AM_CONDITIONAL([MOD_MODIFY], [test "x$enable_mod_modify" = "xyes"]) + +AC_MSG_CHECKING([whether to build mod-supernodal]) +AC_MSG_RESULT([$enable_mod_supernodal]) +AM_CONDITIONAL([MOD_SUPERNODAL], [test "x$enable_mod_supernodal" = "xyes"]) + +AC_MSG_CHECKING([whether to build mod-gpu]) +AC_MSG_RESULT([no]) +AM_CONDITIONAL([MOD_GPU], [false]) + +AC_MSG_CHECKING([whether to use timing routines]) +AC_MSG_RESULT([$enable_timing]) +AM_CONDITIONAL([TIMING], [test "x$enable_timing" = "xyes"]) + +AC_SUBST([CHOLMOD_REQUIRES]) + +m4_ifdef([PKG_INSTALLDIR], [PKG_INSTALLDIR], [AC_SUBST([pkgconfigdir], [${libdir}/pkgconfig])]) +AC_CONFIG_FILES([ + cholmod.pc + Makefile + Check/Makefile + Cholesky/Makefile + Core/Makefile + Demo/Makefile + Doc/Makefile + GPU/Makefile + Include/Makefile + MATLAB/Makefile + MatrixOps/Makefile + Modify/Makefile + Partition/Makefile + Supernodal/Makefile + Tcov/Makefile +]) +AC_CONFIG_LINKS([Tcov/comments.txt:Tcov/comments.txt]) +AC_OUTPUT diff --git a/m4/ax_blas.m4 b/m4/ax_blas.m4 new file mode 100644 --- /dev/null +++ b/m4/ax_blas.m4 @@ -0,0 +1,241 @@ +# =========================================================================== +# https://www.gnu.org/software/autoconf-archive/ax_blas.html +# =========================================================================== +# +# SYNOPSIS +# +# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) +# +# DESCRIPTION +# +# This macro looks for a library that implements the BLAS linear-algebra +# interface (see http://www.netlib.org/blas/). On success, it sets the +# BLAS_LIBS output variable to hold the requisite library linkages. +# +# To link with BLAS, you should link with: +# +# $BLAS_LIBS $LIBS $FLIBS +# +# in that order. FLIBS is the output variable of the +# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is +# sometimes necessary in order to link with F77 libraries. Users will also +# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same +# reason. +# +# Many libraries are searched for, from ATLAS to CXML to ESSL. The user +# may also use --with-blas= in order to use some specific BLAS +# library . In order to link successfully, however, be aware that you +# will probably need to use the same Fortran compiler (which can be set +# via the F77 env. var.) as was used to compile the BLAS library. +# +# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is +# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is +# not found. If ACTION-IF-FOUND is not specified, the default action will +# define HAVE_BLAS. +# +# LICENSE +# +# Copyright (c) 2008 Steven G. Johnson +# Copyright (c) 2019 Geoffrey M. Oxberry +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the +# Free Software Foundation, either version 3 of the License, or (at your +# option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General +# Public License for more details. +# +# You should have received a copy of the GNU General Public License along +# with this program. If not, see . +# +# As a special exception, the respective Autoconf Macro's copyright owner +# gives unlimited permission to copy, distribute and modify the configure +# scripts that are the output of Autoconf when processing the Macro. You +# need not follow the terms of the GNU General Public License when using +# or distributing such scripts, even though portions of the text of the +# Macro appear in them. The GNU General Public License (GPL) does govern +# all other use of the material that constitutes the Autoconf Macro. +# +# This special exception to the GPL applies to versions of the Autoconf +# Macro released by the Autoconf Archive. When you make and distribute a +# modified version of the Autoconf Macro, you may extend this special +# exception to the GPL to apply to your modified version as well. + +#serial 17 + +AU_ALIAS([ACX_BLAS], [AX_BLAS]) +AC_DEFUN([AX_BLAS], [ +AC_PREREQ([2.55]) +AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS]) +AC_REQUIRE([AC_CANONICAL_HOST]) +ax_blas_ok=no + +AC_ARG_WITH(blas, + [AS_HELP_STRING([--with-blas=], [use BLAS library ])]) +case $with_blas in + yes | "") ;; + no) ax_blas_ok=disable ;; + -* | */* | *.a | *.so | *.so.* | *.dylib | *.dylib.* | *.o) + BLAS_LIBS="$with_blas" + ;; + *) BLAS_LIBS="-l$with_blas" ;; +esac + +# Get fortran linker names of BLAS functions to check for. +AC_F77_FUNC(sgemm) +AC_F77_FUNC(dgemm) + +ax_blas_save_LIBS="$LIBS" +LIBS="$LIBS $FLIBS" + +# First, check BLAS_LIBS environment variable +if test $ax_blas_ok = no; then +if test "x$BLAS_LIBS" != x; then + save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" + AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS]) + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes], [BLAS_LIBS=""]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi +fi + +# BLAS linked to by default? (happens on some supercomputers) +if test $ax_blas_ok = no; then + save_LIBS="$LIBS"; LIBS="$LIBS" + AC_MSG_CHECKING([if $sgemm is being linked in already]) + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi + +# BLAS in OpenBLAS library? (http://xianyi.github.com/OpenBLAS/) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(openblas, $sgemm, [ax_blas_ok=yes + BLAS_LIBS="-lopenblas"]) +fi + +# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(atlas, ATL_xerbla, + [AC_CHECK_LIB(f77blas, $sgemm, + [AC_CHECK_LIB(cblas, cblas_dgemm, + [ax_blas_ok=yes + BLAS_LIBS="-lcblas -lf77blas -latlas"], + [], [-lf77blas -latlas])], + [], [-latlas])]) +fi + +# BLAS in PhiPACK libraries? (requires generic BLAS lib, too) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(blas, $sgemm, + [AC_CHECK_LIB(dgemm, $dgemm, + [AC_CHECK_LIB(sgemm, $sgemm, + [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"], + [], [-lblas])], + [], [-lblas])]) +fi + +# BLAS in Intel MKL library? +if test $ax_blas_ok = no; then + # MKL for gfortran + if test x"$ac_cv_fc_compiler_gnu" = xyes; then + # 64 bit + if test $host_cpu = x86_64; then + AC_CHECK_LIB(mkl_gf_lp64, $sgemm, + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread"],, + [-lmkl_gf_lp64 -lmkl_sequential -lmkl_core -lpthread]) + # 32 bit + elif test $host_cpu = i686; then + AC_CHECK_LIB(mkl_gf, $sgemm, + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_gf -lmkl_sequential -lmkl_core -lpthread"],, + [-lmkl_gf -lmkl_sequential -lmkl_core -lpthread]) + fi + # MKL for other compilers (Intel, PGI, ...?) + else + # 64-bit + if test $host_cpu = x86_64; then + AC_CHECK_LIB(mkl_intel_lp64, $sgemm, + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread"],, + [-lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread]) + # 32-bit + elif test $host_cpu = i686; then + AC_CHECK_LIB(mkl_intel, $sgemm, + [ax_blas_ok=yes;BLAS_LIBS="-lmkl_intel -lmkl_sequential -lmkl_core -lpthread"],, + [-lmkl_intel -lmkl_sequential -lmkl_core -lpthread]) + fi + fi +fi +# Old versions of MKL +if test $ax_blas_ok = no; then + AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl -lguide -lpthread"],,[-lguide -lpthread]) +fi + +# BLAS in Apple vecLib library? +if test $ax_blas_ok = no; then + save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS" + AC_MSG_CHECKING([for $sgemm in -framework vecLib]) + AC_LINK_IFELSE([AC_LANG_CALL([], [$sgemm])], [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"]) + AC_MSG_RESULT($ax_blas_ok) + LIBS="$save_LIBS" +fi + +# BLAS in Alpha CXML library? +if test $ax_blas_ok = no; then + AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"]) +fi + +# BLAS in Alpha DXML library? (now called CXML, see above) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"]) +fi + +# BLAS in Sun Performance library? +if test $ax_blas_ok = no; then + if test "x$GCC" != xyes; then # only works with Sun CC + AC_CHECK_LIB(sunmath, acosp, + [AC_CHECK_LIB(sunperf, $sgemm, + [BLAS_LIBS="-xlic_lib=sunperf -lsunmath" + ax_blas_ok=yes],[],[-lsunmath])]) + fi +fi + +# BLAS in SCSL library? (SGI/Cray Scientific Library) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"]) +fi + +# BLAS in SGIMATH library? +if test $ax_blas_ok = no; then + AC_CHECK_LIB(complib.sgimath, $sgemm, + [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"]) +fi + +# BLAS in IBM ESSL library? (requires generic BLAS lib, too) +if test $ax_blas_ok = no; then + AC_CHECK_LIB(blas, $sgemm, + [AC_CHECK_LIB(essl, $sgemm, + [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"], + [], [-lblas $FLIBS])]) +fi + +# Generic BLAS library? +if test $ax_blas_ok = no; then + AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"]) +fi + +AC_SUBST(BLAS_LIBS) + +LIBS="$ax_blas_save_LIBS" + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x"$ax_blas_ok" = xyes; then + ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1]) + : +else + ax_blas_ok=no + $2 +fi +])dnl AX_BLAS diff --git a/m4/ax_code_coverage.m4 b/m4/ax_code_coverage.m4 new file mode 100644 --- /dev/null +++ b/m4/ax_code_coverage.m4 @@ -0,0 +1,271 @@ +# =========================================================================== +# https://www.gnu.org/software/autoconf-archive/ax_code_coverage.html +# =========================================================================== +# +# SYNOPSIS +# +# AX_CODE_COVERAGE() +# +# DESCRIPTION +# +# Defines CODE_COVERAGE_CPPFLAGS, CODE_COVERAGE_CFLAGS, +# CODE_COVERAGE_CXXFLAGS and CODE_COVERAGE_LIBS which should be included +# in the CPPFLAGS, CFLAGS CXXFLAGS and LIBS/LIBADD variables of every +# build target (program or library) which should be built with code +# coverage support. Also defines CODE_COVERAGE_RULES which should be +# substituted in your Makefile; and $enable_code_coverage which can be +# used in subsequent configure output. CODE_COVERAGE_ENABLED is defined +# and substituted, and corresponds to the value of the +# --enable-code-coverage option, which defaults to being disabled. +# +# Test also for gcov program and create GCOV variable that could be +# substituted. +# +# Note that all optimization flags in CFLAGS must be disabled when code +# coverage is enabled. +# +# Usage example: +# +# configure.ac: +# +# AX_CODE_COVERAGE +# +# Makefile.am: +# +# @CODE_COVERAGE_RULES@ +# my_program_LIBS = ... $(CODE_COVERAGE_LIBS) ... +# my_program_CPPFLAGS = ... $(CODE_COVERAGE_CPPFLAGS) ... +# my_program_CFLAGS = ... $(CODE_COVERAGE_CFLAGS) ... +# my_program_CXXFLAGS = ... $(CODE_COVERAGE_CXXFLAGS) ... +# +# This results in a "check-code-coverage" rule being added to any +# Makefile.am which includes "@CODE_COVERAGE_RULES@" (assuming the module +# has been configured with --enable-code-coverage). Running `make +# check-code-coverage` in that directory will run the module's test suite +# (`make check`) and build a code coverage report detailing the code which +# was touched, then print the URI for the report. +# +# In earlier versions of this macro, CODE_COVERAGE_LDFLAGS was defined +# instead of CODE_COVERAGE_LIBS. They are both still defined, but use of +# CODE_COVERAGE_LIBS is preferred for clarity; CODE_COVERAGE_LDFLAGS is +# deprecated. They have the same value. +# +# This code was derived from Makefile.decl in GLib, originally licenced +# under LGPLv2.1+. +# +# LICENSE +# +# Copyright (c) 2012, 2016 Philip Withnall +# Copyright (c) 2012 Xan Lopez +# Copyright (c) 2012 Christian Persch +# Copyright (c) 2012 Paolo Borelli +# Copyright (c) 2012 Dan Winship +# Copyright (c) 2015 Bastien ROUCARIES +# +# This library is free software; you can redistribute it and/or modify it +# under the terms of the GNU Lesser General Public License as published by +# the Free Software Foundation; either version 2.1 of the License, or (at +# your option) any later version. +# +# This library is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser +# General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program. If not, see . + +#serial 27 + +AC_DEFUN([_AX_CODE_COVERAGE_ENABLED],[ + # check for gcov + AC_CHECK_TOOL([GCOV], + [$_AX_CODE_COVERAGE_GCOV_PROG_WITH], + [:]) + AS_IF([test "X$GCOV" = "X:"], + [AC_MSG_ERROR([gcov is needed to do coverage])]) + AC_SUBST([GCOV]) + + dnl Check if gcc is being used + AS_IF([ test "$GCC" = "no" ], [ + AC_MSG_ERROR([not compiling with gcc, which is required for gcov code coverage]) + ]) + + AC_CHECK_PROG([LCOV], [lcov], [lcov]) + AC_CHECK_PROG([GENHTML], [genhtml], [genhtml]) + + AS_IF([ test x"$LCOV" = x ], [ + AC_MSG_ERROR([To enable code coverage reporting you must have lcov installed]) + ]) + + AS_IF([ test x"$GENHTML" = x ], [ + AC_MSG_ERROR([Could not find genhtml from the lcov package]) + ]) + + dnl Build the code coverage flags + dnl Define CODE_COVERAGE_LDFLAGS for backwards compatibility + CODE_COVERAGE_CPPFLAGS="-DNDEBUG" + CODE_COVERAGE_CFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" + CODE_COVERAGE_CXXFLAGS="-O0 -g -fprofile-arcs -ftest-coverage" + CODE_COVERAGE_LIBS="-lgcov" + CODE_COVERAGE_LDFLAGS="$CODE_COVERAGE_LIBS" + + AC_SUBST([CODE_COVERAGE_CPPFLAGS]) + AC_SUBST([CODE_COVERAGE_CFLAGS]) + AC_SUBST([CODE_COVERAGE_CXXFLAGS]) + AC_SUBST([CODE_COVERAGE_LIBS]) + AC_SUBST([CODE_COVERAGE_LDFLAGS]) + + [CODE_COVERAGE_RULES_CHECK=' + -$(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) -k check + $(A''M_V_at)$(MAKE) $(AM_MAKEFLAGS) code-coverage-capture +'] + [CODE_COVERAGE_RULES_CAPTURE=' + $(code_coverage_v_lcov_cap)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --capture --output-file "$(CODE_COVERAGE_OUTPUT_FILE).tmp" --test-name "$(call code_coverage_sanitize,$(PACKAGE_NAME)-$(PACKAGE_VERSION))" --no-checksum --compat-libtool $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_OPTIONS) + $(code_coverage_v_lcov_ign)$(LCOV) $(code_coverage_quiet) $(addprefix --directory ,$(CODE_COVERAGE_DIRECTORY)) --remove "$(CODE_COVERAGE_OUTPUT_FILE).tmp" "/tmp/*" $(CODE_COVERAGE_IGNORE_PATTERN) --output-file "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_LCOV_SHOPTS) $(CODE_COVERAGE_LCOV_RMOPTS) + -@rm -f $(CODE_COVERAGE_OUTPUT_FILE).tmp + $(code_coverage_v_genhtml)LANG=C $(GENHTML) $(code_coverage_quiet) $(addprefix --prefix ,$(CODE_COVERAGE_DIRECTORY)) --output-directory "$(CODE_COVERAGE_OUTPUT_DIRECTORY)" --title "$(PACKAGE_NAME)-$(PACKAGE_VERSION) Code Coverage" --legend --show-details "$(CODE_COVERAGE_OUTPUT_FILE)" $(CODE_COVERAGE_GENHTML_OPTIONS) + @echo "file://$(abs_builddir)/$(CODE_COVERAGE_OUTPUT_DIRECTORY)/index.html" +'] + [CODE_COVERAGE_RULES_CLEAN=' +clean: code-coverage-clean +distclean: code-coverage-clean +code-coverage-clean: + -$(LCOV) --directory $(top_builddir) -z + -rm -rf $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_FILE).tmp $(CODE_COVERAGE_OUTPUT_DIRECTORY) + -find . \( -name "*.gcda" -o -name "*.gcno" -o -name "*.gcov" \) -delete +'] +]) + +AC_DEFUN([_AX_CODE_COVERAGE_DISABLED],[ + [CODE_COVERAGE_RULES_CHECK=' + @echo "Need to reconfigure with --enable-code-coverage" + '] + CODE_COVERAGE_RULES_CAPTURE="$CODE_COVERAGE_RULES_CHECK" + CODE_COVERAGE_RULES_CLEAN='' +]) + +AC_DEFUN([AX_CODE_COVERAGE],[ + dnl Check for --enable-code-coverage + + # allow to override gcov location + AC_ARG_WITH([gcov], + [AS_HELP_STRING([--with-gcov[=GCOV]], [use given GCOV for coverage (GCOV=gcov).])], + [_AX_CODE_COVERAGE_GCOV_PROG_WITH=$with_gcov], + [_AX_CODE_COVERAGE_GCOV_PROG_WITH=gcov]) + + AC_MSG_CHECKING([whether to build with code coverage support]) + AC_ARG_ENABLE([code-coverage], + AS_HELP_STRING([--enable-code-coverage], + [Whether to enable code coverage support]),, + enable_code_coverage=no) + + AM_CONDITIONAL([CODE_COVERAGE_ENABLED], [test "x$enable_code_coverage" = xyes]) + AC_SUBST([CODE_COVERAGE_ENABLED], [$enable_code_coverage]) + AC_MSG_RESULT($enable_code_coverage) + + AS_IF([ test "x$enable_code_coverage" = xyes ], [ + _AX_CODE_COVERAGE_ENABLED + ], [ + _AX_CODE_COVERAGE_DISABLED + ]) + +[CODE_COVERAGE_RULES=' +# Code coverage +# +# Optional: +# - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. +# Multiple directories may be specified, separated by whitespace. +# (Default: $(top_builddir)) +# - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated +# by lcov for code coverage. (Default: +# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info) +# - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage +# reports to be created. (Default: +# $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage) +# - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, +# set to 0 to disable it and leave empty to stay with the default. +# (Default: empty) +# - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov +# instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) +# - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov +# instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) +# - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov +# - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the +# collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) +# - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov +# instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) +# - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering +# lcov instance. (Default: empty) +# - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov +# instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) +# - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the +# genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) +# - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml +# instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) +# - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore +# +# The generated report will be titled using the $(PACKAGE_NAME) and +# $(PACKAGE_VERSION). In order to add the current git hash to the title, +# use the git-version-gen script, available online. + +# Optional variables +CODE_COVERAGE_DIRECTORY ?= $(top_builddir) +CODE_COVERAGE_OUTPUT_FILE ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage.info +CODE_COVERAGE_OUTPUT_DIRECTORY ?= $(PACKAGE_NAME)-$(PACKAGE_VERSION)-coverage +CODE_COVERAGE_BRANCH_COVERAGE ?= +CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ +--rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) +CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) +CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" +CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) +CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) +CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= +CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) +CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ +$(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ +--rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) +CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) +CODE_COVERAGE_IGNORE_PATTERN ?= + +GITIGNOREFILES ?= +GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) + +code_coverage_v_lcov_cap = $(code_coverage_v_lcov_cap_$(V)) +code_coverage_v_lcov_cap_ = $(code_coverage_v_lcov_cap_$(AM_DEFAULT_VERBOSITY)) +code_coverage_v_lcov_cap_0 = @echo " LCOV --capture"\ + $(CODE_COVERAGE_OUTPUT_FILE); +code_coverage_v_lcov_ign = $(code_coverage_v_lcov_ign_$(V)) +code_coverage_v_lcov_ign_ = $(code_coverage_v_lcov_ign_$(AM_DEFAULT_VERBOSITY)) +code_coverage_v_lcov_ign_0 = @echo " LCOV --remove /tmp/*"\ + $(CODE_COVERAGE_IGNORE_PATTERN); +code_coverage_v_genhtml = $(code_coverage_v_genhtml_$(V)) +code_coverage_v_genhtml_ = $(code_coverage_v_genhtml_$(AM_DEFAULT_VERBOSITY)) +code_coverage_v_genhtml_0 = @echo " GEN " $(CODE_COVERAGE_OUTPUT_DIRECTORY); +code_coverage_quiet = $(code_coverage_quiet_$(V)) +code_coverage_quiet_ = $(code_coverage_quiet_$(AM_DEFAULT_VERBOSITY)) +code_coverage_quiet_0 = --quiet + +# sanitizes the test-name: replaces with underscores: dashes and dots +code_coverage_sanitize = $(subst -,_,$(subst .,_,$(1))) + +# Use recursive makes in order to ignore errors during check +check-code-coverage:'"$CODE_COVERAGE_RULES_CHECK"' + +# Capture code coverage data +code-coverage-capture: code-coverage-capture-hook'"$CODE_COVERAGE_RULES_CAPTURE"' + +# Hook rule executed before code-coverage-capture, overridable by the user +code-coverage-capture-hook: + +'"$CODE_COVERAGE_RULES_CLEAN"' + +A''M_DISTCHECK_CONFIGURE_FLAGS ?= +A''M_DISTCHECK_CONFIGURE_FLAGS += --disable-code-coverage + +.PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean +'] + + AC_SUBST([CODE_COVERAGE_RULES]) + m4_ifdef([_AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE([CODE_COVERAGE_RULES])]) +]) diff --git a/m4/ax_lapack.m4 b/m4/ax_lapack.m4 new file mode 100644 --- /dev/null +++ b/m4/ax_lapack.m4 @@ -0,0 +1,134 @@ +# =========================================================================== +# https://www.gnu.org/software/autoconf-archive/ax_lapack.html +# =========================================================================== +# +# SYNOPSIS +# +# AX_LAPACK([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) +# +# DESCRIPTION +# +# This macro looks for a library that implements the LAPACK linear-algebra +# interface (see http://www.netlib.org/lapack/). On success, it sets the +# LAPACK_LIBS output variable to hold the requisite library linkages. +# +# To link with LAPACK, you should link with: +# +# $LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS +# +# in that order. BLAS_LIBS is the output variable of the AX_BLAS macro, +# called automatically. FLIBS is the output variable of the +# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is +# sometimes necessary in order to link with F77 libraries. Users will also +# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same +# reason. +# +# The user may also use --with-lapack= in order to use some specific +# LAPACK library . In order to link successfully, however, be aware +# that you will probably need to use the same Fortran compiler (which can +# be set via the F77 env. var.) as was used to compile the LAPACK and BLAS +# libraries. +# +# ACTION-IF-FOUND is a list of shell commands to run if a LAPACK library +# is found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it +# is not found. If ACTION-IF-FOUND is not specified, the default action +# will define HAVE_LAPACK. +# +# LICENSE +# +# Copyright (c) 2009 Steven G. Johnson +# Copyright (c) 2019 Geoffrey M. Oxberry +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the +# Free Software Foundation, either version 3 of the License, or (at your +# option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General +# Public License for more details. +# +# You should have received a copy of the GNU General Public License along +# with this program. If not, see . +# +# As a special exception, the respective Autoconf Macro's copyright owner +# gives unlimited permission to copy, distribute and modify the configure +# scripts that are the output of Autoconf when processing the Macro. You +# need not follow the terms of the GNU General Public License when using +# or distributing such scripts, even though portions of the text of the +# Macro appear in them. The GNU General Public License (GPL) does govern +# all other use of the material that constitutes the Autoconf Macro. +# +# This special exception to the GPL applies to versions of the Autoconf +# Macro released by the Autoconf Archive. When you make and distribute a +# modified version of the Autoconf Macro, you may extend this special +# exception to the GPL to apply to your modified version as well. + +#serial 10 + +AU_ALIAS([ACX_LAPACK], [AX_LAPACK]) +AC_DEFUN([AX_LAPACK], [ +AC_REQUIRE([AX_BLAS]) +ax_lapack_ok=no + +AC_ARG_WITH(lapack, + [AS_HELP_STRING([--with-lapack=], [use LAPACK library ])]) +case $with_lapack in + yes | "") ;; + no) ax_lapack_ok=disable ;; + -* | */* | *.a | *.so | *.so.* | *.dylib | *.dylib.* | *.o) + LAPACK_LIBS="$with_lapack" + ;; + *) LAPACK_LIBS="-l$with_lapack" ;; +esac + +# Get fortran linker name of LAPACK function to check for. +AC_F77_FUNC(cheev) + +# We cannot use LAPACK if BLAS is not found +if test "x$ax_blas_ok" != xyes; then + ax_lapack_ok=noblas + LAPACK_LIBS="" +fi + +# First, check LAPACK_LIBS environment variable +if test "x$LAPACK_LIBS" != x; then + save_LIBS="$LIBS"; LIBS="$LAPACK_LIBS $BLAS_LIBS $LIBS $FLIBS" + AC_MSG_CHECKING([for $cheev in $LAPACK_LIBS]) + AC_LINK_IFELSE([AC_LANG_CALL([], [$cheev])], [ax_lapack_ok=yes], [LAPACK_LIBS=""]) + AC_MSG_RESULT($ax_lapack_ok) + LIBS="$save_LIBS" + if test $ax_lapack_ok = no; then + LAPACK_LIBS="" + fi +fi + +# LAPACK linked to by default? (is sometimes included in BLAS lib) +if test $ax_lapack_ok = no; then + save_LIBS="$LIBS"; LIBS="$LIBS $BLAS_LIBS $FLIBS" + AC_CHECK_FUNC($cheev, [ax_lapack_ok=yes]) + LIBS="$save_LIBS" +fi + +# Generic LAPACK library? +for lapack in lapack lapack_rs6k; do + if test $ax_lapack_ok = no; then + save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" + AC_CHECK_LIB($lapack, $cheev, + [ax_lapack_ok=yes; LAPACK_LIBS="-l$lapack"], [], [$FLIBS]) + LIBS="$save_LIBS" + fi +done + +AC_SUBST(LAPACK_LIBS) + +# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: +if test x"$ax_lapack_ok" = xyes; then + ifelse([$1],,AC_DEFINE(HAVE_LAPACK,1,[Define if you have LAPACK library.]),[$1]) + : +else + ax_lapack_ok=no + $2 +fi +])dnl AX_LAPACK