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paml: paml (PAML: Phylogenetic Analysis by Maximum Likelihood)
paml:
paml: PAML is a package of programs for phylogenetic analyses of DNA or
paml: protein sequences using maximum likelihood. PAML is not good for
paml: tree making. It may be used to estimate parameters and test
paml: hypotheses to study the evolutionary process, when you have
paml: reconstructed trees using other programs such as PAUP*, PHYLIP,
paml: MOLPHY, PhyML, RaxML, etc. 
paml:
paml: Home: http://abacus.gene.ucl.ac.uk/software/paml.html
paml: References: /usr/doc/paml-4.8a/References