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author Petar Petrov <slackalaxy@gmail.com>2018-07-10 10:05:50 +0100
committer David Spencer <idlemoor@slackbuilds.org>2018-07-10 10:05:50 +0100
commit646d20b456381637ac2bafc3f38b2e7aa5337ad9 (patch)
tree1648e0f0d9c952f426ddec80f11585c2bb3059ef
parent1b07d7b7313477e5b418707035861fab98219966 (diff)
downloadslackbuilds-646d20b45.tar.gz
slackbuilds-646d20b45.tar.xz
academic/treeview: Removed (renamed to treeviewx).
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
-rw-r--r--academic/treeview/README19
-rw-r--r--academic/treeview/References3
-rw-r--r--academic/treeview/cstring.patch71
-rw-r--r--academic/treeview/doinst.sh3
-rw-r--r--academic/treeview/slack-desc19
-rw-r--r--academic/treeview/treeview.SlackBuild111
-rw-r--r--academic/treeview/treeview.desktop8
-rw-r--r--academic/treeview/treeview.info10
-rw-r--r--academic/treeview/treeview.pngbin17326 -> 0 bytes
9 files changed, 0 insertions, 244 deletions
diff --git a/academic/treeview/README b/academic/treeview/README
deleted file mode 100644
index c0a5fc1c0e..0000000000
--- a/academic/treeview/README
+++ /dev/null
@@ -1,19 +0,0 @@
-TreeView X is a simple program for displaying phylogenies. Some of its
-features include:
-
-- reads many different tree file formats (including NEXUS, PHYLIP,
- Hennig86, NONA, MEGA, and ClustalW/X)
-- supports standard the TrueType and Postscript fonts
-- supports native graphics file format for copying pictures into
- other applications, and for saving graphics files
-- print preview
-- can print multiple trees per page and/or one tree over more than
- one page
-- has drag-and-drop facility for easy opening of files
-- Web-based online help
-- tree editor
-
-For details and citation:
-Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic
-trees on personal computers. Computer Applications in the Biosciences
-12: 357-358.
diff --git a/academic/treeview/References b/academic/treeview/References
deleted file mode 100644
index 4d53820121..0000000000
--- a/academic/treeview/References
+++ /dev/null
@@ -1,3 +0,0 @@
-Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic
-trees on personal computers. Computer Applications in the Biosciences
-12: 357-358
diff --git a/academic/treeview/cstring.patch b/academic/treeview/cstring.patch
deleted file mode 100644
index cae987703f..0000000000
--- a/academic/treeview/cstring.patch
+++ /dev/null
@@ -1,71 +0,0 @@
---- tv-0.5.1/ncl-2.0/src/charactersblock.cpp.orig 2017-08-13 08:38:11.451581249 +0700
-+++ tv-0.5.1/ncl-2.0/src/charactersblock.cpp 2017-08-13 08:38:25.267599533 +0700
-@@ -8,6 +8,7 @@
- #include "discretematrix.h"
- #include "assumptionsblock.h"
- #include "charactersblock.h"
-+#include <cstring>
-
- using namespace std;
-
---- tv-0.5.1/ncl-2.0/src/nexus.cpp.orig 2017-08-13 08:40:07.443734383 +0700
-+++ tv-0.5.1/ncl-2.0/src/nexus.cpp 2017-08-13 08:40:17.625747774 +0700
-@@ -2,6 +2,7 @@
- #include "xnexus.h"
- #include "nexustoken.h"
- #include "nexus.h"
-+#include <cstring>
-
- #define NCL_NAME_AND_VERSION "NCL version 2.01"
- #define NCL_COPYRIGHT "Copyright (c) 2000 by Paul O. Lewis"
---- tv-0.5.1/ncl-2.0/src/nexustoken.cpp.orig 2017-08-13 08:41:41.569857692 +0700
-+++ tv-0.5.1/ncl-2.0/src/nexustoken.cpp 2017-08-13 08:41:52.463871895 +0700
-@@ -1,6 +1,7 @@
- #include "nexusdefs.h"
- #include "xnexus.h"
- #include "nexustoken.h"
-+#include <cstring>
-
- using namespace std;
-
---- tv-0.5.1/ncl-2.0/src/nxsstring.cpp.orig 2017-08-13 08:42:36.847929712 +0700
-+++ tv-0.5.1/ncl-2.0/src/nxsstring.cpp 2017-08-13 08:42:48.870945321 +0700
-@@ -20,6 +20,7 @@
- #include <stdio.h>
- #include <assert.h>
- #include <math.h>
-+#include <cstring>
- #include "nxsstring.h"
-
- nxsstring& nxsstring::operator+=( const double d )
---- tv-0.5.1/TreeLib/Parse.cpp.orig 2017-08-13 08:43:50.188024809 +0700
-+++ tv-0.5.1/TreeLib/Parse.cpp 2017-08-13 08:44:00.407038015 +0700
-@@ -23,6 +23,7 @@
-
- #include <ctype.h>
- #include "Parse.h"
-+#include <cstring>
-
- // Return the next token in the string
- tokentype Parser::NextToken ()
---- tv-0.5.1/TreeLib/TreeLib.cpp.orig 2017-08-13 08:45:24.898146879 +0700
-+++ tv-0.5.1/TreeLib/TreeLib.cpp 2017-08-13 08:45:33.518157938 +0700
-@@ -23,6 +23,7 @@
-
- #include "TreeLib.h"
- #include "Parse.h"
-+#include <cstdlib>
-
- #include <vector>
-
---- tv-0.5.1/TreeLib/treereader.cpp.orig 2017-08-13 08:47:09.041280171 +0700
-+++ tv-0.5.1/TreeLib/treereader.cpp 2017-08-13 08:51:04.192577614 +0700
-@@ -22,6 +22,8 @@
- // $Id: treereader.cpp,v 1.5 2003/09/10 12:58:16 rdmp1c Exp $
-
- #include "treereader.h"
-+#include <cstring>
-+#include <stdlib.h>
-
- #if __MWERKS__
- #include <string.h>
diff --git a/academic/treeview/doinst.sh b/academic/treeview/doinst.sh
deleted file mode 100644
index 5fb28930db..0000000000
--- a/academic/treeview/doinst.sh
+++ /dev/null
@@ -1,3 +0,0 @@
-if [ -x /usr/bin/update-desktop-database ]; then
- /usr/bin/update-desktop-database -q usr/share/applications >/dev/null 2>&1
-fi
diff --git a/academic/treeview/slack-desc b/academic/treeview/slack-desc
deleted file mode 100644
index 32c744d759..0000000000
--- a/academic/treeview/slack-desc
+++ /dev/null
@@ -1,19 +0,0 @@
-# HOW TO EDIT THIS FILE:
-# The "handy ruler" below makes it easier to edit a package description.
-# Line up the first '|' above the ':' following the base package name, and
-# the '|' on the right side marks the last column you can put a character in.
-# You must make exactly 11 lines for the formatting to be correct. It's also
-# customary to leave one space after the ':' except on otherwise blank lines.
-
- |-----handy-ruler------------------------------------------------------|
-treeview: treeview (Program to display phylogenetic trees)
-treeview:
-treeview: TreeView X provides a simple way to view the contents of a NEXUS,
-treeview: PHYLIP, Hennig86, Clustal, or other format tree file.
-treeview:
-treeview: Home: http://code.google.com/p/treeviewx/
-treeview: References: /usr/doc/treeview-0.5/References
-treeview:
-treeview:
-treeview:
-treeview:
diff --git a/academic/treeview/treeview.SlackBuild b/academic/treeview/treeview.SlackBuild
deleted file mode 100644
index c98cb4841e..0000000000
--- a/academic/treeview/treeview.SlackBuild
+++ /dev/null
@@ -1,111 +0,0 @@
-#!/bin/sh
-
-# Slackware build script for treeview
-
-# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
-# All rights reserved.
-#
-# Redistribution and use of this script, with or without modification, is
-# permitted provided that the following conditions are met:
-#
-# 1. Redistributions of this script must retain the above copyright
-# notice, this list of conditions and the following disclaimer.
-#
-# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
-# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
-# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
-# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
-# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
-# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
-# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
-# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
-# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-PRGNAM=treeview
-VERSION=${VERSION:-0.5.1}
-BUILD=${BUILD:-1}
-TAG=${TAG:-_SBo}
-
-SRCNAM=tv
-
-if [ -z "$ARCH" ]; then
- case "$( uname -m )" in
- i?86) export ARCH=i586 ;;
- arm*) export ARCH=arm ;;
- *) export ARCH=$( uname -m ) ;;
- esac
-fi
-
-CWD=$(pwd)
-TMP=${TMP:-/tmp/SBo}
-PKG=$TMP/package-$PRGNAM
-OUTPUT=${OUTPUT:-/tmp}
-
-if [ "$ARCH" = "i586" ]; then
- SLKCFLAGS="-O2 -march=i586 -mtune=i686"
- LIBDIRSUFFIX=""
-elif [ "$ARCH" = "i686" ]; then
- SLKCFLAGS="-O2 -march=i686 -mtune=i686"
- LIBDIRSUFFIX=""
-elif [ "$ARCH" = "x86_64" ]; then
- SLKCFLAGS="-O2 -fPIC"
- LIBDIRSUFFIX="64"
-else
- SLKCFLAGS="-O2"
- LIBDIRSUFFIX=""
-fi
-
-set -e
-
-rm -rf $PKG
-mkdir -p $TMP $PKG $OUTPUT
-cd $TMP
-rm -rf $SRCNAM-$VERSION
-tar xvf $CWD/$SRCNAM-$VERSION.tar.gz
-cd $SRCNAM-$VERSION
-chown -R root:root .
-find -L . \
- \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \
- -o -perm 511 \) -exec chmod 755 {} \; -o \
- \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
- -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-
-# Disable SVG support. If you want it, you should build
-# wxGTK or wxPython including svg from contrib/src/svg
-# Then, of course comment the next line.
-sed "s:USE_SVG=1:USE_SVG=0:" -i configure
-
-patch -p1 < $CWD/cstring.patch
-
-CFLAGS="$SLKCFLAGS" \
-CXXFLAGS="$SLKCFLAGS -fpermissive" \
-./configure \
- --prefix=/usr \
- --libdir=/usr/lib${LIBDIRSUFFIX} \
- --sysconfdir=/etc \
- --localstatedir=/var \
- --mandir=/usr/man \
- --build=$ARCH-slackware-linux
-
-make
-make install DESTDIR=$PKG
-
-find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
- | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
-
-mkdir -p $PKG/usr/share/{applications,pixmaps}
-cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
-cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
-
-mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a COPYING INSTALL $PKG/usr/doc/$PRGNAM-$VERSION
-cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
-cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
-
-mkdir -p $PKG/install
-cat $CWD/slack-desc > $PKG/install/slack-desc
-cat $CWD/doinst.sh > $PKG/install/doinst.sh
-
-cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/treeview/treeview.desktop b/academic/treeview/treeview.desktop
deleted file mode 100644
index 790df27869..0000000000
--- a/academic/treeview/treeview.desktop
+++ /dev/null
@@ -1,8 +0,0 @@
-[Desktop Entry]
-Categories=Education;
-Exec=tv
-Icon=treeview
-Name=TreeView X
-StartupNotify=false
-Type=Application
-GenericName=
diff --git a/academic/treeview/treeview.info b/academic/treeview/treeview.info
deleted file mode 100644
index e11a5cbfd8..0000000000
--- a/academic/treeview/treeview.info
+++ /dev/null
@@ -1,10 +0,0 @@
-PRGNAM="treeview"
-VERSION="0.5.1"
-HOMEPAGE="http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/"
-DOWNLOAD="http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz"
-MD5SUM="07e1ed8873c5f19ded7294668233bae1"
-DOWNLOAD_x86_64=""
-MD5SUM_x86_64=""
-REQUIRES="wxPython"
-MAINTAINER="Petar Petrov"
-EMAIL="slackalaxy@gmail.com"
diff --git a/academic/treeview/treeview.png b/academic/treeview/treeview.png
deleted file mode 100644
index fbdf9d2fcc..0000000000
--- a/academic/treeview/treeview.png
+++ /dev/null
Binary files differ