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author Petar Petrov <ppetrov@paju.oulu.fi>2011-12-11 09:54:24 -0600
committer Niels Horn <niels.horn@slackbuilds.org>2011-12-18 00:07:45 -0200
commita13590db46cdd8b1f3c6cb1fb0e58ef6850c9a8b (patch)
treef94481fb16fad8638d548702bc9d1d6c9d27f502
parent3df8e4c4c15beff68e9b3285640f72d77e28dea6 (diff)
downloadslackbuilds-a13590db46cdd8b1f3c6cb1fb0e58ef6850c9a8b.tar.gz
slackbuilds-a13590db46cdd8b1f3c6cb1fb0e58ef6850c9a8b.tar.xz
academic/perlprimer: Updated for version 1.1.21.
Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
-rw-r--r--academic/perlprimer/README4
-rw-r--r--academic/perlprimer/perlprimer.SlackBuild39
-rw-r--r--academic/perlprimer/perlprimer.info8
-rw-r--r--academic/perlprimer/slack-desc4
4 files changed, 38 insertions, 17 deletions
diff --git a/academic/perlprimer/README b/academic/perlprimer/README
index 12917e35e9..aa0b0f5004 100644
--- a/academic/perlprimer/README
+++ b/academic/perlprimer/README
@@ -22,5 +22,5 @@ Marshall OJ. PerlPrimer: cross-platform, graphical primer design for
standard, bisulphite and real-time PCR. Bioinformatics 2004
20(15):2471-2472
-This requires perl-tk and libwww-perl.
-For Real Time PCR, spidey is required.
+This requires perl-tk and libwww-perl. For Real Time PCR, spidey is
+required.
diff --git a/academic/perlprimer/perlprimer.SlackBuild b/academic/perlprimer/perlprimer.SlackBuild
index 87be393b78..7afa41f793 100644
--- a/academic/perlprimer/perlprimer.SlackBuild
+++ b/academic/perlprimer/perlprimer.SlackBuild
@@ -1,19 +1,34 @@
#!/bin/sh
# Slackware build script for perlprimer
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
-# hereby submitted to the public domain
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=perlprimer
-VERSION=${VERSION:-1.1.20}
-ARCH=noarch
+VERSION=${VERSION:-1.1.21}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
+ARCH=noarch
+
CWD=$(pwd)
TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
@@ -25,12 +40,18 @@ rm -rf $PKG
mkdir -p $TMP $PKG $OUTPUT
cd $TMP
rm -rf $PRGNAM-$VERSION
-tar -jxvf $CWD/$PRGNAM-$VERSION.tar.bz2
+tar xvf $CWD/$PRGNAM-$VERSION.tar.bz2
cd $PRGNAM-$VERSION
+chown -R root:root .
+find . \
+ \( -perm 777 -o -perm 775 -o -perm 711 -o -perm 555 -o -perm 511 \) \
+ -exec chmod 755 {} \; -o \
+ \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
+ -exec chmod 644 {} \;
install -D -m755 perlprimer.pl $PKG/usr/bin/perlprimer.pl
+install -D -m644 gcg.603 $PKG/usr/share/$PRGNAM/gcg.603
-# Menu item and icon
mkdir -p $PKG/usr/share/{applications,pixmaps}
cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications/
cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
diff --git a/academic/perlprimer/perlprimer.info b/academic/perlprimer/perlprimer.info
index ad7c5f7d12..e6f382387f 100644
--- a/academic/perlprimer/perlprimer.info
+++ b/academic/perlprimer/perlprimer.info
@@ -1,10 +1,10 @@
PRGNAM="perlprimer"
-VERSION="1.1.20"
+VERSION="1.1.21"
HOMEPAGE="http://perlprimer.sourceforge.net/"
-DOWNLOAD="http://downloads.sourceforge.net/perlprimer/perlprimer-1.1.20.tar.bz2"
-MD5SUM="e3ce015cd5301aeb6120b75692008431"
+DOWNLOAD="http://downloads.sourceforge.net/perlprimer/perlprimer-1.1.21.tar.bz2"
+MD5SUM="016eb870b988a280cdb730a86dd67591"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
MAINTAINER="Petar Petrov"
EMAIL="ppetrov@paju.oulu.fi"
-APPROVED="Niels Horn"
+APPROVED="rworkman"
diff --git a/academic/perlprimer/slack-desc b/academic/perlprimer/slack-desc
index 8e0df5af07..580e83068c 100644
--- a/academic/perlprimer/slack-desc
+++ b/academic/perlprimer/slack-desc
@@ -13,7 +13,7 @@ perlprimer: that designs primers for standard PCR, bisulphite PCR, real-time PCR
perlprimer: (QPCR) and sequencing. It aims to automate and simplify the process
perlprimer: of primer design.
perlprimer:
-perlprimer:
-perlprimer:
perlprimer: References: /usr/doc/perlprimer-$VERSION/References
perlprimer: Home: http://perlprimer.sourceforge.net/
+perlprimer:
+perlprimer: