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| author |   Petar Petrov <ppetrov@paju.oulu.fi> | 2012-12-14 18:50:19 +0100 |
|---|---|---|
| committer |   Matteo Bernardini <ponce@slackbuilds.org> | 2012-12-15 15:13:38 +0100 |
| commit | 0b841ae33af4b3b96d30cfabb56998f588aa9e8f (patch) | |
| tree | 8e7ad5acb8306cef5e555b23b9276f7ecf38e4a1 /academic/seaview | |
| parent | 486b19495c15a5eaf95d129a1e2e7070278c61d9 (diff) | |
| download | slackbuilds-0b841ae33af4b3b96d30cfabb56998f588aa9e8f.tar.gz slackbuilds-0b841ae33af4b3b96d30cfabb56998f588aa9e8f.tar.xz | |
academic/seaview: Updated for version 4.4.0.
Signed-off-by: Matteo Bernardini <ponce@slackbuilds.org>
Diffstat (limited to 'academic/seaview')
| -rw-r--r-- | academic/seaview/README | 16 | ||||
| -rw-r--r-- | academic/seaview/seaview.SlackBuild | 2 | ||||
| -rw-r--r-- | academic/seaview/seaview.info | 8 |
3 files changed, 14 insertions, 12 deletions
diff --git a/academic/seaview/README b/academic/seaview/README index 24e334c55f..c73aa1a016 100644 --- a/academic/seaview/README +++ b/academic/seaview/README @@ -1,13 +1,13 @@ SeaView is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny. Important features are: -1) SeaView reads and writes various file formats (NEXUS, MSF, - CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences - and of phylogenetic trees. +1) SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, + FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of + phylogenetic trees. -2) SeaView drives programs muscle or clustalw for multiple sequence - alignment, and also allows to use any external alignment algorithm - able to read and write FASTA-formatted files. +2) SeaView drives programs muscle or Clustal Omega (clustalo) for + multiple sequence alignment, and also allows to use any external + alignment algorithm able to read and write FASTA-formatted files. 3) Seaview drives the Gblocks program to select blocks of evolutionarily conserved sites. @@ -18,7 +18,9 @@ sequence alignment and molecular phylogeny. Important features are: evolutionary distances, c) maximum likelihood, driving program PhyML 3.0. -5) SeaView draws phylogenetic trees on screen, PDF or PostScript files +5) SeaView prints and draws phylogenetic trees on screen, SVG, PDF or + PostScript files. + 6) SeaView allows to download sequences from EMBL/GenBank/UniProt using the Internet. diff --git a/academic/seaview/seaview.SlackBuild b/academic/seaview/seaview.SlackBuild index b8ca7fd7c1..1f5a552a24 100644 --- a/academic/seaview/seaview.SlackBuild +++ b/academic/seaview/seaview.SlackBuild @@ -25,7 +25,7 @@ # Thanks to Niels Horn for correcting the CFLAGS. PRGNAM=seaview -VERSION=${VERSION:-4.3.5} +VERSION=${VERSION:-4.4.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/seaview/seaview.info b/academic/seaview/seaview.info index 06390bdfbc..4c22b72414 100644 --- a/academic/seaview/seaview.info +++ b/academic/seaview/seaview.info @@ -1,10 +1,10 @@ PRGNAM="seaview" -VERSION="4.3.5" +VERSION="4.4.0" HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" -DOWNLOAD="http://pbil.univ-lyon1.fr/software/seaview_data/archive/seaview_4.3.5.tar.gz" -MD5SUM="5dd45cf8e1fa9a6179aae82215b2b0bb" +DOWNLOAD="http://pbil.univ-lyon1.fr/software/seaview_data/archive/seaview_4.4.0.tar.gz" +MD5SUM="c304054697b6025d323af328bb29938a" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="Gblocks PhyML clustalw fltk13 muscle" +REQUIRES="Gblocks PhyML clustalo fltk13 muscle" MAINTAINER="Petar Petrov" EMAIL="ppetrov@paju.oulu.fi" |