academic/staden: A few enhancements.

Signed-off-by: bedlam <dave@slackbuilds.org>

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>

1 files changed, 34 insertions, 14 deletions

diff --git a/academic/staden/README b/academic/staden/README
index 0d8a67c590..aa36fdbcd8 100644
--- a/academic/staden/README
+++ b/academic/staden/README
@@ -1,20 +1,40 @@
 The programs part of the Staden package provide an excellent and fully
 developed set of DNA sequence assembly, editing, analysis and more.
-
 Some of its features include:
-GAP4 - Performs assembly, contig joining, assembly checking, repeat
-       search, experiment suggestion, read pair analysis and contig
-       editing.
-GAP5 - The new development version of Gap4, designed to work with the
-       large volumes of data attainable through the newer sequencing
-       technologies.
-PREGAP4 - Provides a graphical user interface to set up the processing
-          required to prepare trace data for assembly or analysis.
-SPIN - Compares pairs of sequences in many ways, often presenting its
-       results graphically and has a sliding sequence window linked to
-       the plots.
-TREV - A rapid and flexible viewer and editor for ABI, ALF or SCF
-       trace files.
 
+* GAP4: Performs assembly, contig joining, assembly checking, repeat
+  search, experiment suggestion, read pair analysis and contig editing.
+
+* GAP5: The new development version of Gap4, designed to work with large
+  volumes of data attainable through the newer sequencing technologies.
+       
+* PREGAP4: Provides a graphical user interface to set up the processing
+  required to prepare trace data for assembly or analysis.
+
+* SPIN: Compares pairs of sequences in many ways, often presenting its
+  results graphically and has a sliding sequence window linked to the
+  plots.
+
+* TREV: A rapid and flexible viewer and editor for ABI, ALF or SCF trace
+  files.
+
+NOTE: Xfce submenus
+For XFCE, if you want to have the menu entries grouped in a submenu
+folder (multilevel menu entry), do:
+
+  SUBMENU="YES" ./staden.SlackBuild
+
+NOTE: Staden and EMBOSS:
+Staden used to provide a GUI for (at least part of) the programs from
+EMBOSS. To give it a try, run this after install (of course you need to
+have installed EMBOSS, too):
+
+  create_emboss_files
+
+This will create some files in:
+
+  /usr/share/staden/tcl/spin_emboss/acdtcl/
+
+CITING
 For more information and citing, visit Staden's web page and check the
 "References" file in the documentation.