academic/treeview: Upgraded to version 0.5.

Yes, the previous version was 0.5.1, and YES, somehow 0.5 is newer. Signed-off-by: Robby Workman <rworkman@slackbuilds.org>
author: Petar Petrov <ppetrov@paju.oulu.fi> 2011-12-23 01:24:06 -0600
committer: Niels Horn <niels.horn@slackbuilds.org> 2011-12-23 14:05:43 -0200
commit: 054cb56659bd7a21df5d702ab745a005eb20ddbb (patch)
tree: ff1b493e68672141a8baa6b4331f1e1c8cef6c74 /academic
parent: 68e74dd70bddc5a85bd112e91b10ec1a9a822f94 (diff)
download: slackbuilds-054cb56659bd7a21df5d702ab745a005eb20ddbb.tar.gz
slackbuilds-054cb56659bd7a21df5d702ab745a005eb20ddbb.tar.xz
8 files changed, 45 insertions, 1838 deletions
diff --git a/academic/treeview/README b/academic/treeview/README
index 86281f2a43..4eaca2cd53 100644
--- a/academic/treeview/README
+++ b/academic/treeview/README
@@ -1,21 +1,21 @@
-TreeView is a simple program for displaying phylogenies. Some of its
+TreeView X is a simple program for displaying phylogenies. Some of its
 features include:
 
-- reads many different tree file formats (including NEXUS, PHYLIP, 
+- reads many different tree file formats (including NEXUS, PHYLIP,
   Hennig86, NONA, MEGA, and ClustalW/X)
 - supports standard the TrueType and Postscript fonts
-- supports native graphics file format for copying pictures into 
+- supports native graphics file format for copying pictures into
   other applications, and for saving graphics files
 - print preview
-- can print multiple trees per page and/or one tree over more than 
+- can print multiple trees per page and/or one tree over more than
   one page
 - has drag-and-drop facility for easy opening of files
 - Web-based online help
 - tree editor
 
 For details and citation:
-Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic 
-trees on personal computers. Computer Applications in the Biosciences 
-12: 357-358. 
+Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic
+trees on personal computers. Computer Applications in the Biosciences
+12: 357-358.
 
-This requires wxGTK or wxPython, available at SlackBuilds.org.
+This requires either wxGTK or wxPython.
diff --git a/academic/treeview/References b/academic/treeview/References
index c5c8df7b7f..4d53820121 100644
--- a/academic/treeview/References
+++ b/academic/treeview/References
@@ -1 +1,3 @@
-Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358. 
-\ No newline at end of file
+Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic
+trees on personal computers. Computer Applications in the Biosciences
+12: 357-358
diff --git a/academic/treeview/slack-desc b/academic/treeview/slack-desc
index 1df5c90d4e..e2d7663038 100644
--- a/academic/treeview/slack-desc
+++ b/academic/treeview/slack-desc
@@ -8,12 +8,12 @@
         |-----handy-ruler------------------------------------------------------|
 treeview: treeview (Program to display phylogenetic trees)
 treeview:
-treeview: TreeView provides a simple way to view the contents of a NEXUS,
+treeview: TreeView X provides a simple way to view the contents of a NEXUS,
 treeview: PHYLIP, Hennig86, Clustal, or other format tree file.
 treeview:
+treeview: References: /usr/doc/treeview-$VERSION/References
+treeview: Home: http://code.google.com/p/treeviewx/
 treeview:
 treeview:
 treeview:
 treeview:
-treeview: References: /usr/doc/treeview-$VERSION/References
-treeview: Home: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
diff --git a/academic/treeview/treeview.SlackBuild b/academic/treeview/treeview.SlackBuild
index 2823c52761..3cef689478 100644
--- a/academic/treeview/treeview.SlackBuild
+++ b/academic/treeview/treeview.SlackBuild
@@ -1,20 +1,29 @@
 #!/bin/sh
 
 # Slackware build script for treeview
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and 
-# hereby submitted to the public domain
 
-# Based on the treeview PKGBUILD from Archlinux AUR 
-# (http://aur.archlinux.org/packages.php?ID=19489). 
-# PKGBUILD submitter is abhidg and PKGBUILD maintainer 
-# is Stunts. Thank you!
-
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING 
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_ 
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Copyright 2011  Petar Petrov, ppetrov@paju.oulu.fi
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+#    notice, this list of conditions and the following disclaimer.
+#
+#  THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+#  WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+#  MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.  IN NO
+#  EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+#  SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+#  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+#  OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+#  WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+#  OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+#  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=treeview
-VERSION=${VERSION:-0.5.1}
+VERSION=${VERSION:-0.5}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
@@ -62,13 +71,6 @@ find . \
  \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \
  -exec chmod 644 {} \;
 
-# The patch is from Archlinux AUR, as mentioned above. 
-# For AUR it has been taken from Debian. Thank you both!
-patch -p1 < $CWD/treeviewx_0.5.1-7.diff
-for i in ./debian/patches/*.diff; do
-patch -p1 < $i
-done
-
 # Disable SVG support. If you want it, you should build 
 # wxGTK or wxPython including svg from contrib/src/svg
 # Then, of course comment the next line.
@@ -91,13 +93,11 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
   | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
 
 mkdir -p $PKG/usr/share/{applications,pixmaps}
-cp $CWD/tv.desktop $PKG/usr/share/applications
-cp $CWD/tv.png $PKG/usr/share/pixmaps
+cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
+cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
 
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a \
-  COPYING INSTALL \
-  $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a COPYING INSTALL $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 
diff --git a/academic/treeview/tv.desktop b/academic/treeview/treeview.desktop
index b2bdefa44c..790df27869 100644
--- a/academic/treeview/tv.desktop
+++ b/academic/treeview/treeview.desktop
@@ -1,7 +1,8 @@
 [Desktop Entry]
 Categories=Education;
 Exec=tv
-Icon=tv.png
-Name=TreeView
+Icon=treeview
+Name=TreeView X
 StartupNotify=false
 Type=Application
+GenericName=
diff --git a/academic/treeview/treeview.info b/academic/treeview/treeview.info
index 8fba131fb2..2d9c42d3c7 100644
--- a/academic/treeview/treeview.info
+++ b/academic/treeview/treeview.info
@@ -1,10 +1,10 @@
 PRGNAM="treeview"
-VERSION="0.5.1"
-HOMEPAGE="http://taxonomy.zoology.gla.ac.uk/rod/treeview.html"
-DOWNLOAD="http://darwin.zoology.gla.ac.uk/%7Erpage/treeviewx/download/0.5/tv-0.5.1.tar.gz"
-MD5SUM="07e1ed8873c5f19ded7294668233bae1"
+VERSION="0.5"
+HOMEPAGE="http://code.google.com/p/treeviewx/"
+DOWNLOAD="http://treeviewx.googlecode.com/files/tv-0.5.tar.gz"
+MD5SUM="8059a306b723e6fb4d3befcf302b2920"
 DOWNLOAD_x86_64=""
 MD5SUM_x86_64=""
 MAINTAINER="Petar Petrov"
 EMAIL="ppetrov@paju.oulu.fi"
-APPROVED="Niels Horn"
+APPROVED="rworkman"
diff --git a/academic/treeview/tv.png b/academic/treeview/treeview.png
index fbdf9d2fcc..fbdf9d2fcc 100644
--- a/academic/treeview/tv.png
+++ b/academic/treeview/treeview.png
diff --git a/academic/treeview/treeviewx_0.5.1-7.diff b/academic/treeview/treeviewx_0.5.1-7.diff
deleted file mode 100644
index dc9c12c204..0000000000
--- a/academic/treeview/treeviewx_0.5.1-7.diff
+++ /dev/null
@@ -1,1796 +0,0 @@
---- treeviewx-0.5.1.orig/debian/watch
-+++ treeviewx-0.5.1/debian/watch
-@@ -0,0 +1,2 @@
-+version=3
-+http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download.html download\/\d\.\d\/tv-(\d+)\.(\d+)\.(\d+)\.tar\.gz
---- treeviewx-0.5.1.orig/debian/treeviewx.sharedmimeinfo
-+++ treeviewx-0.5.1/debian/treeviewx.sharedmimeinfo
-@@ -0,0 +1,13 @@
-+<?xml version="1.0"?>
-+<mime-info xmlns='http://www.freedesktop.org/standards/shared-mime-info'>
-+  <mime-type type="text/x-clustalw-tree">
-+    <comment>Phylogenetic tree in Clustal W format</comment>
-+    <comment xml:lang="fr">Arbre phylogénétique au format Clustal W</comment>
-+    <comment xml:lang="it">Albero filogenetico in formato Clustal W</comment>
-+    <magic priority="50">
-+      <match type="string" offset="0" value="(\n"/>
-+    </magic>
-+    <glob pattern="*.phb"/>
-+    <glob pattern="*.ph"/>
-+  </mime-type>
-+</mime-info>
---- treeviewx-0.5.1.orig/debian/menu
-+++ treeviewx-0.5.1/debian/menu
-@@ -0,0 +1,8 @@
-+?package(treeviewx):\
-+	needs="X11"\
-+	section="Applications/Science/Biology"\
-+	title="TreeView X"\
-+	command="/usr/bin/tv"\
-+	icon="/usr/share/pixmaps/treeviewx.xpm" \
-+	hints="Phylogenetic tree drawing program"\
-+	longtitle="TreeView X: a phylogenetic tree viewer which can do SVG export"
---- treeviewx-0.5.1.orig/debian/rules
-+++ treeviewx-0.5.1/debian/rules
-@@ -0,0 +1,8 @@
-+#!/usr/bin/make -f
-+
-+include /usr/share/cdbs/1/class/autotools.mk
-+include /usr/share/cdbs/1/rules/patchsys-quilt.mk
-+include /usr/share/cdbs/1/rules/debhelper.mk
-+
-+install/treeviewx::
-+	install -m 644 bitmaps/treeview.xpm $(CURDIR)/debian/treeviewx/usr/share/pixmaps/treeviewx.xpm
---- treeviewx-0.5.1.orig/debian/upstream-metadata.yaml
-+++ treeviewx-0.5.1/debian/upstream-metadata.yaml
-@@ -0,0 +1,14 @@
-+Contact: Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+DOI: 10.1093/bioinformatics/12.4.357
-+Homepage: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ 
-+Name: Treeview X
-+PMID: 8902363 
-+Reference-Author: Page, Roderic D. M.
-+Reference-Journal: Comput. Appl. Biosci.
-+Reference-Number: 4
-+Reference-Page: 357-8
-+Reference-Title: TreeView: an application to display phylogenetic trees on personal computers
-+Reference-URL: http://bioinformatics.oxfordjournals.org/cgi/content/citation/12/4/357
-+Reference-Volume: 12
-+Reference-Year: 1996
-+Watch: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download.html download\/\d\.\d\/tv-(\d+)\.(\d+)\.(\d+)\.tar\.gz
---- treeviewx-0.5.1.orig/debian/control
-+++ treeviewx-0.5.1/debian/control
-@@ -0,0 +1,22 @@
-+Source: treeviewx
-+Section: science
-+Priority: optional
-+Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
-+DM-Upload-Allowed: yes
-+Uploaders: Charles Plessy <plessy@debian.org>,
-+ Andreas Tille <tille@debian.org>
-+Build-Depends: debhelper (>= 7.1), cdbs, autotools-dev, quilt, libwxgtk2.8-dev
-+Standards-Version: 3.8.4
-+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/treeviewx/trunk/?rev=0&sc=0
-+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/treeviewx/trunk/
-+Homepage: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
-+
-+Package: treeviewx
-+Architecture: any
-+Depends: ${shlibs:Depends}, ${misc:Depends}
-+Description: Displays and prints phylogenetic trees
-+ TreeView X is an open source and multi-platform program to display
-+ phylogenetic trees. It can read and display NEXUS and Newick format tree files
-+ (such as those output by PAUP*, ClustalX, TREE-PUZZLE, and other programs). It
-+ allows to order the branches of the trees, and to export the trees in SVG
-+ format.
---- treeviewx-0.5.1.orig/debian/copyright
-+++ treeviewx-0.5.1/debian/copyright
-@@ -0,0 +1,61 @@
-+Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5’.
-+
-+Name   :  TreeView X
-+Author :  Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+Source :  http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
-+
-+License: GPL-2+
-+   
-+   TreeView X is free software; you can redistribute it and/or modify
-+   it under the terms of the GNU General Public License as published by
-+   the Free Software Foundation; either version 2 of the License, or
-+   (at your option) any later version.
-+   
-+   TreeView X is distributed in the hope that it will be useful,
-+   but WITHOUT ANY WARRANTY; without even the implied warranty of
-+   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-+   GNU General Public License for more details.
-+   
-+   You should have received a copy of the GNU General Public License
-+   along with this package; if not, write to the Free Software
-+   Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+
-+TreeView X has been released by its author under the GNU GPL (see COPYING), but
-+most of its files use a header which places them under the GNU Library GPL
-+(LGPL). The author of TreeView X confirmed to the maintainer of this package
-+that his intention is to have TreeView X released under the GPL. Therefore, as
-+permitted the clause 3 of the LGPL, the licence of these files is changed to
-+the GPL through the patch in the following file:
-+debian/patches/60_LGPLtoGPL.dpatch
-+
-+Some files which are part of TreeView X - namely ntree.h, ntree.cpp and
-+lcaquery.cpp - have no copyright notice. The author of TreeView X confirmed to
-+the maintainer of this package that he is the copyright holder for them.
-+Therefore, they are distributed under the terms of the COPYING file, which is
-+the GNU GPL.
-+
-+On Debian systems, the complete text of the GNU Library General Public
-+License can be found in ‘/usr/share/common-licenses/LGPL-2’ and the
-+complete text of the GNU General Public License version 2 can be found
-+in ‘/usr/share/common-licenses/GPL-2’.
-+
-+Files: ncl-2.0/*
-+Copyright: © 1999 Paul O. Lewis
-+License: GPL-2+
-+Comment: TreeView X is statically linked to the Nexus Class Library.
-+
-+Files: TreeLib/*
-+Copyright: © 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+License: GPL-2+
-+Comment: The files under the TreeLib directory are part of TreeView X,
-+ as they have never been released as an independent library.
-+
-+Files: debian/tv.1.xml debian/tv.1
-+Copyright: © 2006-2008 Charles Plessy <charles-debian-nospam@plessy.org>
-+License: Same as TreeView X
-+
-+Files: debian/*
-+Copyright: © 2006–2010 Charles Plessy <plessy@debian.org>
-+           © 2007 David Paleino <d.paleino@gmail.com>
-+License: PD
-+ Please treat the packaging work as if it were in the public domain.
---- treeviewx-0.5.1.orig/debian/treeviewx.mime
-+++ treeviewx-0.5.1/debian/treeviewx.mime
-@@ -0,0 +1 @@
-+text/x-clustalw-tree; /usr/bin/tv '%s'; description=ClustalW Phylogenetic Tree
---- treeviewx-0.5.1.orig/debian/manpages
-+++ treeviewx-0.5.1/debian/manpages
-@@ -0,0 +1 @@
-+debian/tv.1
---- treeviewx-0.5.1.orig/debian/README.source
-+++ treeviewx-0.5.1/debian/README.source
-@@ -0,0 +1,4 @@
-+This packages uses the quilt patch system. Please read
-+/usr/share/doc/quilt/README.source for more information.
-+
-+ -- Andreas Tille <tille@debian.org>  Mon, 31 Aug 2009 14:50:19 +0200
---- treeviewx-0.5.1.orig/debian/dirs
-+++ treeviewx-0.5.1/debian/dirs
-@@ -0,0 +1,2 @@
-+/usr/share/applications
-+/usr/share/pixmaps
---- treeviewx-0.5.1.orig/debian/treeviewx.desktop
-+++ treeviewx-0.5.1/debian/treeviewx.desktop
-@@ -0,0 +1,19 @@
-+[Desktop Entry]
-+Version=1.0
-+Terminal=false
-+Icon=treeviewx
-+Exec=tv %f
-+Name=TreeView X
-+GenericName=Tree Plotter
-+GenericName[en]=Tree Plotter
-+GenericName[fr]=Traceur d'arbres
-+GenericName[pt_BR]=Plotador de árvores
-+GenericName[it]=Plotter di Alberi
-+Comment=Displays, modifies, prints and exports in SVG format phylogenetic trees
-+Comment[en]=Displays, modifies, prints and exports in SVG format phylogenetic trees
-+Comment[fr]=Affiche, modifie, imprime et exporte au format SVG des arbres phyolgénétiques
-+Comment[pt_BR]=Exibe, modifica e exporta em formato SVG árvores filogenéticas
-+Comment[it]=Mostra, modifica, stampa ed esporta in formato SVG alberi filogenetici
-+Type=Application
-+Categories=Biology;Science;Education;
-+MimeType=text/x-clustalw-tree;
---- treeviewx-0.5.1.orig/debian/tv.1.xml
-+++ treeviewx-0.5.1/debian/tv.1.xml
-@@ -0,0 +1,109 @@
-+<?xml version='1.0' encoding='UTF-8'?>
-+<?xml-stylesheet type="text/xsl"
-+	href="http://docbook.sourceforge.net/release/xsl/current/manpages/docbook.xsl"?>
-+<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook XML V4.4//EN"
-+	"http://www.oasis-open.org/docbook/xml/4.4/docbookx.dtd" [
-+
-+  <!ENTITY dhfirstname "<firstname>Charles</firstname>">
-+  <!ENTITY dhsurname   "<surname>Plessy</surname>">
-+  <!ENTITY dhsection   "<manvolnum>1</manvolnum>">
-+  <!ENTITY dhemail     "<email>charles-debian-nospam@plessy.org</email>">
-+  <!ENTITY dhusername  "Charles Plessy">
-+  <!ENTITY dhucpackage "<refentrytitle>TREEVIEW X</refentrytitle>">
-+  <!ENTITY dhpackage   "tv">
-+  <!ENTITY debian      "<productname>Debian</productname>">
-+  <!ENTITY gnu         "<acronym>GNU</acronym>">
-+  <!ENTITY gpl         "&gnu; <acronym>GPL</acronym>">
-+]>
-+
-+<refentry>
-+  <refentryinfo>
-+    <address>
-+      &dhemail;
-+    </address>
-+<!--    <author>
-+      &dhfirstname;
-+      &dhsurname; 
-+    </author>  -->
-+    <copyright>
-+      <year>2006</year>
-+      <year>2008</year>
-+      <holder>&dhusername;</holder>
-+    </copyright>
-+  </refentryinfo>
-+  <refmeta>
-+    &dhucpackage;
-+
-+    &dhsection;
-+  </refmeta>
-+  <refnamediv>
-+    <refname>&dhpackage;</refname>
-+
-+    <refpurpose>displays and prints phylogenetic trees</refpurpose>
-+  </refnamediv>
-+  <refsynopsisdiv>
-+    <cmdsynopsis>
-+      <command>tv</command> <arg choice="opt"><replaceable>filename</replaceable></arg>
-+    </cmdsynopsis>
-+  </refsynopsisdiv>
-+  <refsect1>
-+    <title>DESCRIPTION</title>
-+
-+
-+    <para><command>tv</command> is the program that starts the
-+    TreeView X GUI.</para>
-+    
-+    
-+     <para>TreeView X is an open source and multi-platform program to
-+     display phylogenetic trees. It can read and display NEXUS and
-+     Newick format tree files (such as those output by PAUP*,
-+     ClustalX, TREE-PUZZLE, and other programs). It allows to order
-+     the branches of the trees, and to export the trees in SVG
-+     format.</para>
-+
-+     <para>If started from the command line with
-+     <filename>filename</filename> as an argument, TreeView X
-+     will open the tree stored in <filename>filename</filename>.</para>
-+
-+	     
-+  </refsect1>
-+
-+  <refsect1>
-+    <title>SEE ALSO</title>
-+
-+    <para>
-+        At present there is is no documentation for TreeView X. In the
-+    meantime please see the online documentation for TreeView
-+    (remember that TreeView X has only a subset of the features of
-+    TreeView). http://taxonomy.zoology.gla.ac.uk/rod/treeview/treeview_manual.html
-+      </para>
-+  </refsect1>
-+
-+  <refsect1>
-+    <title>REFERENCE</title>
-+    <para>Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357-358.</para>
-+  </refsect1>
-+      
-+  <refsect1>
-+    <title>AUTHOR</title>
-+
-+     <para><application>TreeView X</application> was written by Rod
-+     Page (r.page@bio.gla.ac.uk) URL:
-+     http://darwin.zoology.gla.ac.uk/~rpage/treeviewx.</para>
-+
-+    <para>This manual page was written by &dhusername; (&dhemail;) for
-+      the &debian; system (but may be used by others).</para>
-+      
-+      <!-- You can  copy, distribute and/or modify this document under the same terms as TreeView X itself. -->
-+      
-+    <para>
-+      Permission is granted to copy, distribute and/or modify TreeView X and this document under the terms of the &gnu; General Public License, Version 2 or any later version published by the Free Software Foundation.
-+    </para>
-+	
-+    <para>
-+      On Debian systems, the complete text of the GNU General Public
-+      License can be found in /usr/share/common-licenses/GPL.
-+    </para>
-+
-+  </refsect1>
-+</refentry>
---- treeviewx-0.5.1.orig/debian/tree.phb
-+++ treeviewx-0.5.1/debian/tree.phb
-@@ -0,0 +1,55 @@
-+(
-+(
-+(
-+(
-+(
-+(
-+(
-+(
-+(
-+gi|6981382|ref|NP_037328.1|:0.01004,
-+gi|53765|emb|CAA40856.1|:0.01133)
-+100:0.04471,
-+gi|3024415|sp|O35507|PPARA_CAV:0.06881)
-+100:0.02177,
-+gi|19401877|gb|AAL87699.1|AF48:0.07924)
-+100:0.11628,
-+(
-+gi|50882280|gb|AAT85615.1|:0.13020,
-+gi|14994035|gb|AAK76392.1|:-0.00248)
-+100:0.11211)
-+100:0.04510,
-+(
-+(
-+gi|68303294|gb|AAY89587.1|:0.24273,
-+gi|24666202|ref|NP_730322.1|:0.29207)
-+100:0.05743,
-+(
-+(
-+gi|32026|emb|CAA68398.1|:0.02054,
-+gi|114585739|ref|XP_001164266.:0.00169)
-+85:0.02207,
-+gi|109502151|ref|XP_001059459.:0.04437)
-+100:0.30861)
-+100:0.14445)
-+100:0.04138,
-+(
-+gi|85376346|gb|ABC70398.1|:0.14816,
-+gi|16304880|emb|CAC95230.1|:0.21548)
-+74:0.01669)
-+100:0.08347,
-+gi|13311191|emb|CAC34402.1|:0.08993)
-+100:0.07117,
-+(
-+(
-+(
-+gi|6755138|ref|NP_035276.1|:0.00295,
-+gi|454001|gb|AAC52134.1|:-0.00295)
-+60:0.00339,
-+gi|14627168|gb|AAG60685.2|:0.00503)
-+85:0.00763,
-+gi|22003526|gb|AAM88773.1|:0.01343)
-+34:0.00198)
-+22:0.00163,
-+gi|66471842|emb|CAD91388.1|:0.06787,
-+gi|47678881|dbj|BAD20642.1|:0.00789)TRICHOTOMY;
---- treeviewx-0.5.1.orig/debian/README.Debian
-+++ treeviewx-0.5.1/debian/README.Debian
-@@ -0,0 +1,7 @@
-+TreeView X for Debian
-+---------------------
-+
-+The original source code was modified by wrapping some character chains with
-+wxT(), in order to build it with wxGTK 2.6. 
-+
-+ -- Charles Plessy <charles-debian-nospam@plessy.org>, Sat, 11 Feb 2006 17:27:26 +0900
---- treeviewx-0.5.1.orig/debian/tv.1
-+++ treeviewx-0.5.1/debian/tv.1
-@@ -0,0 +1,51 @@
-+.\"     Title: TREEVIEW X
-+.\"    Author: 
-+.\" Generator: DocBook XSL Stylesheets v1.73.2 <http://docbook.sf.net/>
-+.\"      Date: 01/12/2008
-+.\"    Manual: 
-+.\"    Source: 
-+.\"
-+.TH "TREEVIEW X" "1" "01/12/2008" "" ""
-+.\" disable hyphenation
-+.nh
-+.\" disable justification (adjust text to left margin only)
-+.ad l
-+.SH "NAME"
-+tv - displays and prints phylogenetic trees
-+.SH "SYNOPSIS"
-+.HP 3
-+\fBtv\fR [\fIfilename\fR]
-+.SH "DESCRIPTION"
-+.PP
-+\fBtv\fR
-+is the program that starts the TreeView X GUI\.
-+.PP
-+TreeView X is an open source and multi\-platform program to display phylogenetic trees\. It can read and display NEXUS and Newick format tree files (such as those output by PAUP*, ClustalX, TREE\-PUZZLE, and other programs)\. It allows to order the branches of the trees, and to export the trees in SVG format\.
-+.PP
-+If started from the command line with
-+\fIfilename\fR
-+as an argument, TreeView X will open the tree stored in
-+\fIfilename\fR\.
-+.SH "SEE ALSO"
-+.PP
-+At present there is is no documentation for TreeView X\. In the meantime please see the online documentation for TreeView (remember that TreeView X has only a subset of the features of TreeView)\. http://taxonomy\.zoology\.gla\.ac\.uk/rod/treeview/treeview_manual\.html
-+.SH "REFERENCE"
-+.PP
-+Page, R\. D\. M\. 1996\. TREEVIEW: An application to display phylogenetic trees on personal computers\. Computer Applications in the Biosciences 12: 357\-358\.
-+.SH "AUTHOR"
-+.PP
-+TreeView X
-+was written by Rod Page (r\.page@bio\.gla\.ac\.uk) URL: http://darwin\.zoology\.gla\.ac\.uk/~rpage/treeviewx\.
-+.PP
-+This manual page was written by Charles Plessy (<charles\-debian\-nospam@plessy\.org>) for the
-+Debian(TM)
-+system (but may be used by others)\.
-+.PP
-+Permission is granted to copy, distribute and/or modify TreeView\ X and this document under the terms of the
-+GNU
-+General Public License, Version 2 or any later version published by the Free Software Foundation\.
-+.PP
-+On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common\-licenses/GPL\.
-+.SH "COPYRIGHT"
-+Copyright \(co 2006, 2008 Charles Plessy
-+.br
---- treeviewx-0.5.1.orig/debian/changelog
-+++ treeviewx-0.5.1/debian/changelog
-@@ -0,0 +1,96 @@
-+treeviewx (0.5.1-7) unstable; urgency=low
-+
-+  * Refreshed debian/copyright according to latest developments
-+    of the machine-readable format.
-+  * Collected upstream information in debian/upstream-metadata.yaml
-+    and removed bibliographic information from the long description
-+    (debian/control).
-+  * Added in ‘debian/patches/90_fix_for_wx2.8.diff’ Ryan Niebur's patch
-+    to build TreeView X with wxWidgets 2.8 (Closes: #567238, thanks!).
-+  * Build against libwxgtk2.8-dev (debian/control).
-+  * Checked conformance with Policy 3.8.4 and incremented Standards-Version
-+    to reflect this (debian/control, no changes needed).
-+
-+ -- Charles Plessy <plessy@debian.org>  Thu, 28 Jan 2010 18:52:23 +0900
-+
-+treeviewx (0.5.1-6) unstable; urgency=low
-+
-+  [ Charles Plessy ]
-+  * Updated my email address.
-+
-+  [ David Paleino ]
-+  * Removed myself from Uploaders
-+
-+  [ Andreas Tille ]
-+  * Standards-Version: 3.8.3 (Added README.source)
-+  * debhelper 7
-+  * Added myself to uploaders
-+  * Tested whether package also build against libwxgtk2.8-dev but failed
-+    -> Upstream should be contacted about wxgtk upgrade to be safe for
-+       the future
-+  * Removed explicit dependency from libgnomeprintui2.2-0
-+    Closes: #542579
-+
-+ -- Andreas Tille <tille@debian.org>  Tue, 01 Sep 2009 11:18:11 +0200
-+
-+treeviewx (0.5.1-5) unstable; urgency=low
-+
-+  [ Charles Plessy ]
-+  * Debian Menu transition: Apps/Science becomes Applications/Science/Biology.
-+  * debian/control:
-+    - Moved the Homepage: field out from the package's description.
-+    - Checked conformance with policy 3.7.3
-+    - Allowed upload by Debian Maintainers.
-+  * MIME support:
-+    - debian/treeviewx.sharedmimeinfo declares that .phb and .ph files are
-+      Clustal W phylogenetic trees.
-+    - debian/treeviewx.mime and debian/treeviewx.desktop declare that
-+      TreeView X can open Clustal W phylogenetic trees.
-+    - debian/rules calls dh_installmime.
-+  * debian/copyright: made machine-parsable.
-+  * Relicensed the manpage under "same as TreeView X" terms.
-+  * Switched to CDBS and quilt.
-+
-+  [ David Paleino ]
-+  * Added support for MIME types (.phb is now associated to treeviewx)
-+  * fixed FTBFS with GCC 4.3: missing #includes (Closes: #455177)
-+  * Added statically generated tv.1 (to save buildd time)
-+  * Other minor fixes
-+  * Added Italian to the .desktop file
-+
-+ -- Charles Plessy <charles-debian-nospam@plessy.org>  Sat, 26 Jan 2008 22:32:36 +0900
-+
-+treeviewx (0.5.1-4) unstable; urgency=low
-+
-+  * Add Subversion repository URL to debian/control.
-+  * Including /usr/share/dpatch/dpatch.make in debian/rules.
-+  * Including a patch from Martin Michlmayr to build TreeView X
-+    with gcc 4.3 (Closes: #417729).
-+
-+ -- Charles Plessy <charles-debian-nospam@plessy.org>  Mon,  9 Apr 2007 10:03:14 +0900
-+
-+treeviewx (0.5.1-3) unstable; urgency=low
-+
-+  [ William Alexander Grant ]
-+  * Added 70_choose_tree.dpatch, prevents segfault when choosing no tree.
-+
-+  [ Charles Plessy ]
-+  * Tested and imported the patch from Ubuntu. Thanks William !
-+
-+ -- Charles Plessy <charles-debian-nospam@plessy.org>  Tue, 13 Feb 2007 23:38:33 +0900
-+
-+treeviewx (0.5.1-2) unstable; urgency=low
-+
-+  * Added a transitional dependency on libgnomeprintui2.2-0, thanks to Roger
-+    Leigh for understanding the problem. Closes: #392219
-+  * Fixed the debian/watch file.
-+  * Added an example tree (courtesy of Roger Leigh).
-+
-+ -- Charles Plessy <charles-debian-nospam@plessy.org>  Sat, 14 Oct 2006 12:16:21 +0900
-+
-+treeviewx (0.5.1-1) unstable; urgency=low
-+
-+  * Initial release Closes: #352506
-+
-+ -- Charles Plessy <charles-debian-nospam@plessy.org>  Thu, 16 Mar 2006 11:30:23 +0900
-+
---- treeviewx-0.5.1.orig/debian/compat
-+++ treeviewx-0.5.1/debian/compat
-@@ -0,0 +1 @@
-+7
---- treeviewx-0.5.1.orig/debian/examples
-+++ treeviewx-0.5.1/debian/examples
-@@ -0,0 +1 @@
-+debian/tree.phb
---- treeviewx-0.5.1.orig/debian/install
-+++ treeviewx-0.5.1/debian/install
-@@ -0,0 +1 @@
-+debian/treeviewx.desktop	/usr/share/applications/
---- treeviewx-0.5.1.orig/debian/patches/series
-+++ treeviewx-0.5.1/debian/patches/series
-@@ -0,0 +1,7 @@
-+45_gcc4.3.diff
-+50_wxT_tv.cpp.diff
-+51_wxT_tview.cpp.diff
-+60_LGPLtoGPL.diff
-+70_choose_tree.diff
-+80_missing_includes.diff
-+90_fix_for_wx2.8.diff
---- treeviewx-0.5.1.orig/debian/patches/51_wxT_tview.cpp.diff
-+++ treeviewx-0.5.1/debian/patches/51_wxT_tview.cpp.diff
-@@ -0,0 +1,25 @@
-+Adding wxT escapes in the tview.cpp file
-+--- tv-0.5.1-old/tview.cpp	2005-08-31 17:55:13.000000000 +0900
-++++ tv-0.5.1/tview.cpp	2006-03-13 09:35:50.000000000 +0900
-+@@ -184,8 +184,8 @@
-+ 	wxString pictureFileName = GetFrame()->GetTitle();
-+ 	pictureFileName += wxT(".emf");
-+ 	wxFrame *f = GetMainFrame();
-+-   	wxFileDialog dialog((wxWindow *)f, "Save Picture as", "", pictureFileName,
-+-        "Enhanced metafile (*.emf)|*.emf",
-++   	wxFileDialog dialog((wxWindow *)f, wxT("Save Picture as"), wxT(""), pictureFileName,
-++        wxT("Enhanced metafile (*.emf)|*.emf"),
-+         wxSAVE|wxOVERWRITE_PROMPT);
-+     
-+     if (dialog.ShowModal() == wxID_OK)
-+@@ -204,8 +204,8 @@
-+ 	#else
-+ 	wxFrame *f = GetMainFrame();
-+ 	#endif 
-+-    wxFileDialog dialog((wxWindow *)f, "Save Picture as", "", pictureFileName,
-+-        "SVG vector picture files (*.svg)|*.svg",
-++    wxFileDialog dialog((wxWindow *)f, wxT("Save Picture as"), wxT(""), pictureFileName,
-++        wxT("SVG vector picture files (*.svg)|*.svg"),
-+         wxSAVE|wxOVERWRITE_PROMPT);
-+ 
-+     if (dialog.ShowModal() == wxID_OK)
---- treeviewx-0.5.1.orig/debian/patches/90_fix_for_wx2.8.diff
-+++ treeviewx-0.5.1/debian/patches/90_fix_for_wx2.8.diff
-@@ -0,0 +1,15 @@
-+Author: Ryan Niebur
-+Bug-Debian: http://bugs.debian.org/567238
-+Description: To build with wxwidgets 2.8
-+Forwarded: Roderic Page <r.page@bio.gla.ac.uk>
-+--- treeviewx-0.5.1.orig/tview.cpp
-++++ treeviewx-0.5.1/tview.cpp
-+@@ -994,7 +994,7 @@
-+ MyCanvas::MyCanvas(wxView *v, wxMDIChildFrame *frame, const wxPoint& pos, const wxSize& size, long style):
-+  wxScrolledWindow(frame, -1, pos, size, style)
-+ {
-+-	SetBackgroundColour(wxColour("WHITE"));
-++	SetBackgroundColour(wxColour(wxT("WHITE")));
-+ 	view = v;
-+ 	magnification = 1;
-+ }
---- treeviewx-0.5.1.orig/debian/patches/80_missing_includes.diff
-+++ treeviewx-0.5.1/debian/patches/80_missing_includes.diff
-@@ -0,0 +1,71 @@
-+80_strlen_charactersblock.cpp.dpatch by David Paleino <d.paleino@gmail.com>
-+Fixes "error: ‘strlen’ was not declared in this scope" during compilation
-+diff -urNad trunk~/TreeLib/Parse.cpp trunk/TreeLib/Parse.cpp
-+--- trunk~/TreeLib/Parse.cpp	2007-11-18 14:39:17.000000000 +0100
-++++ trunk/TreeLib/Parse.cpp	2007-11-18 14:39:18.000000000 +0100
-+@@ -19,8 +19,9 @@
-+  */
-+ 
-+  // $Id: Parse.cpp,v 1.9 2002/02/23 12:22:32 rdmp1c Exp $
-+- 
-++
-+ #include <ctype.h>
-++#include <cstring>
-+ #include "Parse.h"
-+ 
-+ // Return the next token in the string
-+diff -urNad trunk~/TreeLib/treereader.cpp trunk/TreeLib/treereader.cpp
-+--- trunk~/TreeLib/treereader.cpp	2007-11-18 14:39:17.000000000 +0100
-++++ trunk/TreeLib/treereader.cpp	2007-11-18 14:39:36.000000000 +0100
-+@@ -22,6 +22,7 @@
-+ 
-+ #include "treereader.h"
-+ #include <cstdlib>
-++#include <cstring>
-+ 
-+ #if __MWERKS__
-+ 	#include <string.h>
-+diff -urNad trunk~/ncl-2.0/src/charactersblock.cpp trunk/ncl-2.0/src/charactersblock.cpp
-+--- trunk~/ncl-2.0/src/charactersblock.cpp	2007-11-18 14:14:43.000000000 +0100
-++++ trunk/ncl-2.0/src/charactersblock.cpp	2007-11-18 14:39:18.000000000 +0100
-+@@ -8,6 +8,7 @@
-+ #include "discretematrix.h"
-+ #include "assumptionsblock.h"
-+ #include "charactersblock.h"
-++#include <cstring>
-+ 
-+ using namespace std;
-+ 
-+diff -urNad trunk~/ncl-2.0/src/nexus.cpp trunk/ncl-2.0/src/nexus.cpp
-+--- trunk~/ncl-2.0/src/nexus.cpp	2007-10-02 09:51:43.000000000 +0200
-++++ trunk/ncl-2.0/src/nexus.cpp	2007-11-18 14:39:18.000000000 +0100
-+@@ -2,6 +2,7 @@
-+ #include "xnexus.h"
-+ #include "nexustoken.h"
-+ #include "nexus.h"
-++#include <cstring>
-+ 
-+ #define NCL_NAME_AND_VERSION  "NCL version 2.01"
-+ #define NCL_COPYRIGHT         "Copyright (c) 2000 by Paul O. Lewis"
-+diff -urNad trunk~/ncl-2.0/src/nexustoken.cpp trunk/ncl-2.0/src/nexustoken.cpp
-+--- trunk~/ncl-2.0/src/nexustoken.cpp	2007-10-02 09:51:43.000000000 +0200
-++++ trunk/ncl-2.0/src/nexustoken.cpp	2007-11-18 14:39:18.000000000 +0100
-+@@ -1,6 +1,7 @@
-+ #include "nexusdefs.h"
-+ #include "xnexus.h"
-+ #include "nexustoken.h"
-++#include <cstring>
-+ 
-+ using namespace std;
-+ 
-+diff -urNad trunk~/ncl-2.0/src/nxsstring.cpp trunk/ncl-2.0/src/nxsstring.cpp
-+--- trunk~/ncl-2.0/src/nxsstring.cpp	2007-10-02 09:51:43.000000000 +0200
-++++ trunk/ncl-2.0/src/nxsstring.cpp	2007-11-18 14:39:18.000000000 +0100
-+@@ -20,6 +20,7 @@
-+ #include <stdio.h>
-+ #include <assert.h>
-+ #include <math.h>
-++#include <cstring>
-+ #include "nxsstring.h"
-+ 
-+ nxsstring& nxsstring::operator+=( const double d )
---- treeviewx-0.5.1.orig/debian/patches/70_choose_tree.diff
-+++ treeviewx-0.5.1/debian/patches/70_choose_tree.diff
-@@ -0,0 +1,13 @@
-+## 70_choose_tree.dpatch by William Alexander Grant <william.grant@ubuntu.com.au>
-+diff -urNad treeviewx-0.5.1~/tview.cpp treeviewx-0.5.1/tview.cpp
-+--- treeviewx-0.5.1~/tview.cpp	2006-12-17 10:33:21.000000000 +1100
-++++ treeviewx-0.5.1/tview.cpp	2006-12-17 10:33:53.000000000 +1100
-+@@ -742,7 +742,7 @@
-+ 
-+     dialog.SetSelection(p.GetCurrentTreeNumber());
-+ 
-+-    if (dialog.ShowModal() == wxID_OK)
-++    if ((dialog.ShowModal() == wxID_OK) && (p.GetNumTrees() != 0))
-+     {
-+ 		int j = dialog.GetSelection ();				
-+ #ifdef __WXMAC__
---- treeviewx-0.5.1.orig/debian/patches/60_LGPLtoGPL.diff
-+++ treeviewx-0.5.1/debian/patches/60_LGPLtoGPL.diff
-@@ -0,0 +1,1067 @@
-+Converts LGPL statements to GPL, updates FSF's adress.
-+diff -ruN tv.orig/COPYING tv/COPYING
-+--- tv.orig/COPYING	2006-06-12 21:11:38.000000000 +0900
-++++ tv/COPYING	2006-06-28 20:39:19.000000000 +0900
-+@@ -2,7 +2,7 @@
-+ 		       Version 2, June 1991
-+ 
-+  Copyright (C) 1989, 1991 Free Software Foundation, Inc.
-+-     59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
-++	51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
-+  Everyone is permitted to copy and distribute verbatim copies
-+  of this license document, but changing it is not allowed.
-+ 
-+@@ -305,7 +305,7 @@
-+ 
-+     You should have received a copy of the GNU General Public License
-+     along with this program; if not, write to the Free Software
-+-    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
-++    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+ 
-+ 
-+ Also add information on how to contact you by electronic and paper mail.
-+diff -ruN tv.orig/LGPLtoGPL.diff tv/LGPLtoGPL.diff
-+--- tv.orig/LGPLtoGPL.diff	1970-01-01 09:00:00.000000000 +0900
-++++ tv/LGPLtoGPL.diff	2006-06-28 20:48:52.000000000 +0900
-+@@ -0,0 +1,21 @@
-++diff -ruN tv.orig/COPYING tv/COPYING
-++--- tv.orig/COPYING	2006-06-12 21:11:38.000000000 +0900
-+++++ tv/COPYING	2006-06-28 20:39:19.000000000 +0900
-++@@ -2,7 +2,7 @@
-++ 		       Version 2, June 1991
-++ 
-++  Copyright (C) 1989, 1991 Free Software Foundation, Inc.
-++-     59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
-+++	51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
-++  Everyone is permitted to copy and distribute verbatim copies
-++  of this license document, but changing it is not allowed.
-++ 
-++@@ -305,7 +305,7 @@
-++ 
-++     You should have received a copy of the GNU General Public License
-++     along with this program; if not, write to the Free Software
-++-    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
-+++    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-++ 
-++ 
-++ Also add information on how to contact you by electronic and paper mail.
-+diff -ruN tv.orig/tdoc.cpp tv/tdoc.cpp
-+--- tv.orig/tdoc.cpp	2006-06-12 21:11:38.000000000 +0900
-++++ tv/tdoc.cpp	2006-06-28 20:30:56.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: tdoc.cpp,v 1.6 2001/07/25 10:37:06 rdmp1c Exp $
-+diff -ruN tv.orig/tdoc.h tv/tdoc.h
-+--- tv.orig/tdoc.h	2006-06-28 20:26:50.000000000 +0900
-++++ tv/tdoc.h	2006-06-28 20:24:07.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: tdoc.h,v 1.4 2001/07/24 10:49:48 rdmp1c Exp $
-+diff -ruN tv.orig/tproject.h tv/tproject.h
-+--- tv.orig/tproject.h	2006-06-12 21:11:38.000000000 +0900
-++++ tv/tproject.h	2006-06-28 20:30:40.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: tproject.h,v 1.9 2005/08/31 08:55:25 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/lcaquery.h tv/TreeLib/lcaquery.h
-+--- tv.orig/TreeLib/lcaquery.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/lcaquery.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+  // $Id: lcaquery.h,v 1.1 2002/03/14 14:11:42 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/mast.cpp tv/TreeLib/mast.cpp
-+--- tv.orig/TreeLib/mast.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/mast.cpp	2006-06-28 20:31:07.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+  // $Id: mast.cpp,v 1.5 2005/05/24 22:55:16 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/mast.h tv/TreeLib/mast.h
-+--- tv.orig/TreeLib/mast.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/mast.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+  // $Id: mast.h,v 1.1 2002/05/16 16:07:32 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/nodeiterator.h tv/TreeLib/nodeiterator.h
-+--- tv.orig/TreeLib/nodeiterator.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/nodeiterator.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+  // $Id: nodeiterator.h,v 1.5 2005/03/29 16:48:52 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/Parse.cpp tv/TreeLib/Parse.cpp
-+--- tv.orig/TreeLib/Parse.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/Parse.cpp	2006-06-28 20:31:08.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+  // $Id: Parse.cpp,v 1.9 2002/02/23 12:22:32 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/Parse.h tv/TreeLib/Parse.h
-+--- tv.orig/TreeLib/Parse.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/Parse.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: Parse.h,v 1.7 2004/03/04 23:22:42 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/profile.h tv/TreeLib/profile.h
-+--- tv.orig/TreeLib/profile.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/profile.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: profile.h,v 1.30 2005/08/31 08:55:59 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/quartet.cpp tv/TreeLib/quartet.cpp
-+--- tv.orig/TreeLib/quartet.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/quartet.cpp	2006-06-28 20:31:08.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+  // $Id: quartet.cpp,v 1.2 2002/03/14 16:37:13 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/quartet.h tv/TreeLib/quartet.h
-+--- tv.orig/TreeLib/quartet.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/quartet.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+  // $Id: quartet.h,v 1.1 2002/03/14 14:11:42 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/tokeniser.cpp tv/TreeLib/tokeniser.cpp
-+--- tv.orig/TreeLib/tokeniser.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/tokeniser.cpp	2006-06-28 20:31:08.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+ // $Id: tokeniser.cpp,v 1.14 2005/09/05 07:44:48 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/tokeniser.h tv/TreeLib/tokeniser.h
-+--- tv.orig/TreeLib/tokeniser.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/tokeniser.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: tokeniser.h,v 1.14 2003/09/17 13:05:57 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/treedrawer.cpp tv/TreeLib/treedrawer.cpp
-+--- tv.orig/TreeLib/treedrawer.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/treedrawer.cpp	2006-06-28 20:31:08.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+ // $Id: treedrawer.cpp,v 1.18 2005/09/06 13:00:14 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/treedrawer.h tv/TreeLib/treedrawer.h
-+--- tv.orig/TreeLib/treedrawer.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/treedrawer.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+ // $Id: treedrawer.h,v 1.8 2004/03/16 07:07:40 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/TreeLib.cpp tv/TreeLib/TreeLib.cpp
-+--- tv.orig/TreeLib/TreeLib.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/TreeLib.cpp	2006-06-28 20:31:08.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+ // $Id: TreeLib.cpp,v 1.26 2004/05/13 12:22:11 jcotton Exp $
-+diff -ruN tv.orig/TreeLib/TreeLib.h tv/TreeLib/TreeLib.h
-+--- tv.orig/TreeLib/TreeLib.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/TreeLib.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+ // $Id: TreeLib.h,v 1.26 2004/05/13 12:22:11 jcotton Exp $
-+diff -ruN tv.orig/TreeLib/treeorder.cpp tv/TreeLib/treeorder.cpp
-+--- tv.orig/TreeLib/treeorder.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/treeorder.cpp	2006-06-28 20:31:08.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+ // $Id: treeorder.cpp,v 1.2 2005/02/23 14:19:00 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/treeorder.h tv/TreeLib/treeorder.h
-+--- tv.orig/TreeLib/treeorder.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/treeorder.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+ 
-+  // $Id: treeorder.h,v 1.4 2005/02/23 14:19:00 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/treereader.cpp tv/TreeLib/treereader.cpp
-+--- tv.orig/TreeLib/treereader.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/treereader.cpp	2006-06-28 20:31:08.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: treereader.cpp,v 1.5 2003/09/10 12:58:16 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/treereader.h tv/TreeLib/treereader.h
-+--- tv.orig/TreeLib/treereader.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/treereader.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+ // $Id: treereader.h,v 1.4 2003/10/21 10:58:45 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/treewriter.cpp tv/TreeLib/treewriter.cpp
-+--- tv.orig/TreeLib/treewriter.cpp	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/treewriter.cpp	2006-06-28 20:31:08.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: treewriter.cpp,v 1.4 2005/02/23 14:32:44 rdmp1c Exp $
-+diff -ruN tv.orig/TreeLib/treewriter.h tv/TreeLib/treewriter.h
-+--- tv.orig/TreeLib/treewriter.h	2006-06-12 21:11:34.000000000 +0900
-++++ tv/TreeLib/treewriter.h	2006-06-28 20:31:23.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A library for manipulating phylogenetic trees.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+ // $Id: treewriter.h,v 1.5 2005/02/23 14:36:08 rdmp1c Exp $
-+diff -ruN tv.orig/treeorder_dialog.cpp tv/treeorder_dialog.cpp
-+--- tv.orig/treeorder_dialog.cpp	2006-06-12 21:11:38.000000000 +0900
-++++ tv/treeorder_dialog.cpp	2006-06-28 20:30:56.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+ // $Id: treeorder_dialog.cpp,v 1.2 2005/02/21 19:41:24 rdmp1c Exp $
-+diff -ruN tv.orig/treeorder_dialog.h tv/treeorder_dialog.h
-+--- tv.orig/treeorder_dialog.h	2006-06-12 21:11:38.000000000 +0900
-++++ tv/treeorder_dialog.h	2006-06-28 20:30:40.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+ // $Id: treeorder_dialog.h,v 1.2 2003/10/22 16:46:26 rdmp1c Exp $
-+diff -ruN tv.orig/tv.cpp tv/tv.cpp
-+--- tv.orig/tv.cpp	2006-06-12 21:11:38.000000000 +0900
-++++ tv/tv.cpp	2006-06-28 20:30:56.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: tv.cpp,v 1.41 2005/03/23 13:30:32 rdmp1c Exp $
-+diff -ruN tv.orig/tv.h tv/tv.h
-+--- tv.orig/tv.h	2006-06-12 21:11:38.000000000 +0900
-++++ tv/tv.h	2006-06-28 20:29:26.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: tv.h,v 1.4 2004/08/05 15:55:26 rdmp1c Exp $
-+diff -ruN tv.orig/tview.cpp tv/tview.cpp
-+--- tv.orig/tview.cpp	2006-06-12 21:11:38.000000000 +0900
-++++ tv/tview.cpp	2006-06-28 20:30:56.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: tview.cpp,v 1.37 2005/08/31 08:55:13 rdmp1c Exp $
-+diff -ruN tv.orig/tview.h tv/tview.h
-+--- tv.orig/tview.h	2006-06-12 21:11:38.000000000 +0900
-++++ tv/tview.h	2006-06-28 20:30:43.000000000 +0900
-+@@ -3,20 +3,19 @@
-+  * A phylogenetic tree viewer.
-+  * Copyright (C) 2001 Roderic D. M. Page <r.page@bio.gla.ac.uk>
-+  *
-+- * This library is free software; you can redistribute it and/or
-+- * modify it under the terms of the GNU Library General Public
-+- * License as published by the Free Software Foundation; either
-+- * version 2 of the License, or (at your option) any later version.
-++ * This program is free software; you can redistribute it and/or modify
-++ * it under the terms of the GNU General Public License as published by
-++ * the Free Software Foundation; either version 2 of the License, or
-++ * (at your option) any later version.
-+  *
-+- * This library is distributed in the hope that it will be useful,
-++ * This program is distributed in the hope that it will be useful,
-+  * but WITHOUT ANY WARRANTY; without even the implied warranty of
-+- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
-+- * Library General Public License for more details.
-++ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-++ * GNU General Public License for more details.
-+  *
-+- * You should have received a copy of the GNU Library General Public
-+- * License along with this library; if not, write to the Free
-+- * Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
-+- * MA 02111-1307, USA.
-++ * You should have received a copy of the GNU General Public License
-++ * along with this program; if not, write to the Free Software
-++ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301 USA
-+  */
-+  
-+  // $Id: tview.h,v 1.21 2005/08/31 08:55:01 rdmp1c Exp $
---- treeviewx-0.5.1.orig/debian/patches/50_wxT_tv.cpp.diff
-+++ treeviewx-0.5.1/debian/patches/50_wxT_tv.cpp.diff
-@@ -0,0 +1,17 @@
-+Adding wxT escapes in the tv.cpp file
-+--- tv-0.5.1-old/tv.cpp	2005-03-23 22:30:32.000000000 +0900
-++++ tv-0.5.1/tv.cpp	2006-03-13 09:35:38.000000000 +0900
-+@@ -312,11 +312,11 @@
-+ 	{
-+ #ifdef __WXMSW__
-+ 		file_menu->AppendSeparator();
-+-		file_menu->Append(SAVEAS_PICTURE_CMD, "Save As Picture..."), wxT("Save picture of tree to metafile");
-++		file_menu->Append(SAVEAS_PICTURE_CMD, wxT("Save As Picture...")), wxT("Save picture of tree to metafile");
-+ #else
-+ 	#ifdef USE_SVG
-+ 		file_menu->AppendSeparator();
-+-		file_menu->Append(SAVEAS_PICTURE_CMD, "Save As Picture..."), wxT("Save picture of tree to SVG file");
-++		file_menu->Append(SAVEAS_PICTURE_CMD, wxT("Save As Picture...")), wxT("Save picture of tree to SVG file");
-+ 	#endif
-+ #endif
-+ 		file_menu->AppendSeparator();
---- treeviewx-0.5.1.orig/debian/patches/45_gcc4.3.diff
-+++ treeviewx-0.5.1/debian/patches/45_gcc4.3.diff
-@@ -0,0 +1,21 @@
-+Makes TreeView X buildable with gcc 4.3
-+--- ./TreeLib/TreeLib.cpp~	2007-04-04 12:30:13.000000000 +0000
-++++ ./TreeLib/TreeLib.cpp	2007-04-04 12:30:19.000000000 +0000
-+@@ -23,6 +23,7 @@
-+ #include "TreeLib.h"
-+ #include "Parse.h"
-+ 
-++#include <cstdlib>
-+ #include <vector>
-+ 
-+ 
-+--- ./TreeLib/treereader.cpp~	2007-04-04 12:33:15.000000000 +0000
-++++ ./TreeLib/treereader.cpp	2007-04-04 12:33:27.000000000 +0000
-+@@ -21,6 +21,7 @@
-+  // $Id: treereader.cpp,v 1.5 2003/09/10 12:58:16 rdmp1c Exp $
-+ 
-+ #include "treereader.h"
-++#include <cstdlib>
-+ 
-+ #if __MWERKS__
-+ 	#include <string.h>
author	Petar Petrov <ppetrov@paju.oulu.fi>	2011-12-23 01:24:06 -0600
committer	Niels Horn <niels.horn@slackbuilds.org>	2011-12-23 14:05:43 -0200
commit	054cb56659bd7a21df5d702ab745a005eb20ddbb (patch)
tree	ff1b493e68672141a8baa6b4331f1e1c8cef6c74 /academic
parent	68e74dd70bddc5a85bd112e91b10ec1a9a822f94 (diff)
download	slackbuilds-054cb56659bd7a21df5d702ab745a005eb20ddbb.tar.gz slackbuilds-054cb56659bd7a21df5d702ab745a005eb20ddbb.tar.xz