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author Petar Petrov <slackalaxy@gmail.com>2016-01-16 16:04:29 +0200
committer Willy Sudiarto Raharjo <willysr@slackbuilds.org>2016-01-17 09:40:16 +0700
commitec514e32c410c839f8b552194bd94ee9e9b3920b (patch)
tree6a4834ebfea2263834f6e9a8c8778d0a4f1605fd /academic
parentbfa0708f52a0fa06defcadd14439cd7671d05bf3 (diff)
downloadslackbuilds-ec514e32c410c839f8b552194bd94ee9e9b3920b.tar.gz
slackbuilds-ec514e32c410c839f8b552194bd94ee9e9b3920b.tar.xz
Multiple: update email, year and slack-desc
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/EMBASSY/EMBASSY.SlackBuild2
-rw-r--r--academic/EMBASSY/EMBASSY.info38
-rw-r--r--academic/EMBOSS/EMBOSS.SlackBuild2
-rw-r--r--academic/EMBOSS/EMBOSS.info4
-rw-r--r--academic/EMBOSS/slack-desc2
-rw-r--r--academic/Gblocks/Gblocks.SlackBuild2
-rw-r--r--academic/Gblocks/Gblocks.info2
-rw-r--r--academic/Gblocks/slack-desc2
-rw-r--r--academic/ImageJ/ImageJ.SlackBuild2
-rw-r--r--academic/ImageJ/ImageJ.info2
-rw-r--r--academic/ImageJ/slack-desc4
-rw-r--r--academic/PhyML/PhyML.SlackBuild2
-rw-r--r--academic/PhyML/PhyML.info2
-rw-r--r--academic/PhyML/slack-desc2
-rw-r--r--academic/QtiPlot/QtiPlot.SlackBuild2
-rw-r--r--academic/QtiPlot/QtiPlot.info4
-rw-r--r--academic/aline/aline.SlackBuild2
-rw-r--r--academic/aline/aline.info2
-rw-r--r--academic/aline/slack-desc2
-rw-r--r--academic/amplicon/amplicon.SlackBuild2
-rw-r--r--academic/amplicon/amplicon.info2
-rw-r--r--academic/amplicon/slack-desc2
-rw-r--r--academic/amplifx/amplifx.SlackBuild2
-rw-r--r--academic/amplifx/amplifx.info2
-rw-r--r--academic/archeopteryx/archeopteryx.SlackBuild2
-rw-r--r--academic/archeopteryx/archeopteryx.info2
-rw-r--r--academic/arka/arka.SlackBuild24
-rw-r--r--academic/arka/arka.info2
-rw-r--r--academic/arka/slack-desc2
-rw-r--r--academic/bowtie/bowtie.SlackBuild2
-rw-r--r--academic/bowtie/bowtie.info4
-rw-r--r--academic/bowtie2/bowtie2.SlackBuild2
-rw-r--r--academic/bowtie2/bowtie2.info2
-rw-r--r--academic/bwa/bwa.SlackBuild2
-rw-r--r--academic/bwa/bwa.info2
-rw-r--r--academic/cap3/cap3.SlackBuild2
-rw-r--r--academic/cap3/cap3.info2
-rw-r--r--academic/cap3/slack-desc2
-rw-r--r--academic/cistrome-CEAS/cistrome-CEAS.SlackBuild2
-rw-r--r--academic/cistrome-CEAS/cistrome-CEAS.info2
-rw-r--r--academic/cistrome-MACS/cistrome-MACS.SlackBuild2
-rw-r--r--academic/cistrome-MACS/cistrome-MACS.info2
-rw-r--r--academic/cistrome-MACS/slack-desc2
-rw-r--r--academic/clustalo/clustalo.SlackBuild2
-rw-r--r--academic/clustalo/clustalo.info2
-rw-r--r--academic/clustalo/slack-desc2
-rw-r--r--academic/clustalw/clustalw.SlackBuild24
-rw-r--r--academic/clustalw/clustalw.info2
-rw-r--r--academic/clustalw/slack-desc10
-rw-r--r--academic/clustalx/clustalx.SlackBuild32
-rw-r--r--academic/clustalx/clustalx.info2
-rw-r--r--academic/clustalx/slack-desc4
-rw-r--r--academic/cufflinks/cufflinks.SlackBuild2
-rw-r--r--academic/cufflinks/cufflinks.info2
-rw-r--r--academic/cutadapt/cutadapt.SlackBuild2
-rw-r--r--academic/cutadapt/cutadapt.info2
-rw-r--r--academic/cutadapt/slack-desc2
-rw-r--r--academic/finchtv/finchtv.SlackBuild2
-rw-r--r--academic/finchtv/finchtv.info2
-rw-r--r--academic/gchemutils/gchemutils.SlackBuild2
-rw-r--r--academic/gchemutils/gchemutils.info2
-rw-r--r--academic/gelemental/gelemental.SlackBuild2
-rw-r--r--academic/gelemental/gelemental.info4
-rw-r--r--academic/geneconv/geneconv.SlackBuild2
-rw-r--r--academic/geneconv/geneconv.info2
-rw-r--r--academic/genometools/genometools.SlackBuild2
-rw-r--r--academic/genometools/genometools.info2
-rw-r--r--academic/genpak/genpak.SlackBuild2
-rw-r--r--academic/genpak/genpak.info2
-rw-r--r--academic/gp2fasta/gp2fasta.SlackBuild26
-rw-r--r--academic/gp2fasta/gp2fasta.info2
-rw-r--r--academic/gp2fasta/slack-desc2
-rw-r--r--academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild2
-rw-r--r--academic/ij-plugins-LOCI/ij-plugins-LOCI.info2
-rw-r--r--academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild2
-rw-r--r--academic/ij-plugins-UCSD/ij-plugins-UCSD.info2
-rw-r--r--academic/io_lib/io_lib.SlackBuild2
-rw-r--r--academic/io_lib/io_lib.info2
-rw-r--r--academic/isoelectric-point/isoelectric-point.SlackBuild28
-rw-r--r--academic/isoelectric-point/isoelectric-point.info2
-rw-r--r--academic/isoelectric-point/slack-desc6
-rw-r--r--academic/jalview/jalview.SlackBuild2
-rw-r--r--academic/jalview/jalview.info2
-rw-r--r--academic/lalnview/lalnview.SlackBuild2
-rw-r--r--academic/lalnview/lalnview.info2
-rw-r--r--academic/lalnview/slack-desc2
-rw-r--r--academic/mafft/mafft.SlackBuild2
-rw-r--r--academic/mafft/mafft.info2
-rw-r--r--academic/mkDSSP/mkDSSP.SlackBuild2
-rw-r--r--academic/mkDSSP/mkDSSP.info2
-rw-r--r--academic/mkDSSP/slack-desc2
-rw-r--r--academic/mrbayes/mrbayes.SlackBuild2
-rw-r--r--academic/mrbayes/mrbayes.info2
-rw-r--r--academic/muscle/muscle.SlackBuild24
-rw-r--r--academic/muscle/muscle.info2
-rw-r--r--academic/muscle/slack-desc4
-rw-r--r--academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild2
-rw-r--r--academic/ncbi-blast-plus/ncbi-blast-plus.info2
-rw-r--r--academic/ncbi-blast/ncbi-blast.SlackBuild2
-rw-r--r--academic/ncbi-blast/ncbi-blast.info2
-rw-r--r--academic/paml/paml.SlackBuild2
-rw-r--r--academic/paml/paml.info2
-rw-r--r--academic/pamlX/pamlX.SlackBuild2
-rw-r--r--academic/pamlX/pamlX.info2
-rw-r--r--academic/perlprimer/perlprimer.SlackBuild2
-rw-r--r--academic/perlprimer/perlprimer.info2
-rw-r--r--academic/perlprimer/slack-desc2
-rw-r--r--academic/plasmidomics/plasmidomics.SlackBuild2
-rw-r--r--academic/plasmidomics/plasmidomics.info2
-rw-r--r--academic/primer3/primer3.SlackBuild2
-rw-r--r--academic/primer3/primer3.info2
-rw-r--r--academic/primer3/slack-desc2
-rw-r--r--academic/samtools/samtools.SlackBuild2
-rw-r--r--academic/samtools/samtools.info2
-rw-r--r--academic/seaview/seaview.SlackBuild2
-rw-r--r--academic/seaview/seaview.info2
-rw-r--r--academic/sequence-analysis/sequence-analysis.SlackBuild2
-rw-r--r--academic/sequence-analysis/sequence-analysis.info2
-rw-r--r--academic/sequence-analysis/slack-desc2
-rw-r--r--academic/snpEff/snpEff.SlackBuild2
-rw-r--r--academic/snpEff/snpEff.info2
-rw-r--r--academic/spidey/spidey.SlackBuild2
-rw-r--r--academic/spidey/spidey.info6
-rw-r--r--academic/squizz/squizz.SlackBuild2
-rw-r--r--academic/squizz/squizz.info2
-rw-r--r--academic/staden/slack-desc4
-rw-r--r--academic/staden/staden.SlackBuild2
-rw-r--r--academic/staden/staden.info2
-rw-r--r--academic/t_coffee/t_coffee.SlackBuild2
-rw-r--r--academic/t_coffee/t_coffee.info2
-rw-r--r--academic/tabix/tabix.SlackBuild2
-rw-r--r--academic/tabix/tabix.info2
-rw-r--r--academic/topdraw/topdraw.SlackBuild2
-rw-r--r--academic/topdraw/topdraw.info2
-rw-r--r--academic/tophat/tophat.SlackBuild2
-rw-r--r--academic/tophat/tophat.info2
-rw-r--r--academic/treeview/slack-desc2
-rw-r--r--academic/treeview/treeview.SlackBuild2
-rw-r--r--academic/treeview/treeview.info2
-rw-r--r--academic/ucsc-blat/slack-desc2
-rw-r--r--academic/ucsc-blat/ucsc-blat.SlackBuild2
-rw-r--r--academic/ucsc-blat/ucsc-blat.info2
-rw-r--r--academic/ugene/ugene.SlackBuild2
-rw-r--r--academic/ugene/ugene.info4
-rw-r--r--academic/vcftools/vcftools.SlackBuild2
-rw-r--r--academic/vcftools/vcftools.info2
-rw-r--r--academic/zotero/zotero.SlackBuild4
-rw-r--r--academic/zotero/zotero.info2
148 files changed, 298 insertions, 216 deletions
diff --git a/academic/EMBASSY/EMBASSY.SlackBuild b/academic/EMBASSY/EMBASSY.SlackBuild
index 67e2ea8471..81c21fe1b0 100644
--- a/academic/EMBASSY/EMBASSY.SlackBuild
+++ b/academic/EMBASSY/EMBASSY.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for EMBASSY
-# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/EMBASSY/EMBASSY.info b/academic/EMBASSY/EMBASSY.info
index eada51d0b1..8d09c9ac5d 100644
--- a/academic/EMBASSY/EMBASSY.info
+++ b/academic/EMBASSY/EMBASSY.info
@@ -1,24 +1,24 @@
PRGNAM="EMBASSY"
VERSION="6.6.0"
HOMEPAGE="http://emboss.sourceforge.net/embassy/"
-DOWNLOAD="http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/CBSTOOLS-1.0.0.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/CLUSTALOMEGA-1.1.0.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/DOMAINATRIX-0.1.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/DOMALIGN-0.1.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/DOMSEARCH-0.1.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/EMNU-1.05.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/ESIM4-1.0.0.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/HMMER-2.3.2.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/IPRSCAN-4.3.1.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/MEME-4.7.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/MSE-3.0.0.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/MYEMBOSS-6.5.1.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/MYEMBOSSDEMO-6.5.0.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/PHYLIPNEW-3.69.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/SIGNATURE-0.1.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/STRUCTURE-0.1.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/TOPO-2.0.650.tar.gz \
- http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/VIENNA-1.7.2.650.tar.gz"
+DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/EMBOSS/CBSTOOLS-1.0.0.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/CLUSTALOMEGA-1.1.0.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMAINATRIX-0.1.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMALIGN-0.1.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/DOMSEARCH-0.1.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/EMNU-1.05.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/ESIM4-1.0.0.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/HMMER-2.3.2.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/IPRSCAN-4.3.1.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MEME-4.7.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MSE-3.0.0.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MYEMBOSS-6.5.1.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/MYEMBOSSDEMO-6.5.0.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/PHYLIPNEW-3.69.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/SIGNATURE-0.1.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/STRUCTURE-0.1.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/TOPO-2.0.650.tar.gz \
+ https://sourceforge.net/projects/sboppetrov/files/EMBOSS/VIENNA-1.7.2.650.tar.gz"
MD5SUM="237577573d9cbe5df18bac8dae17240b \
e4243a86c6127d99b1d501a54a7fbbf3 \
5cbc136ded7826a0066e51074738a5a1 \
@@ -41,4 +41,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="EMBOSS"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/EMBOSS/EMBOSS.SlackBuild b/academic/EMBOSS/EMBOSS.SlackBuild
index cefe887897..2d139f3a76 100644
--- a/academic/EMBOSS/EMBOSS.SlackBuild
+++ b/academic/EMBOSS/EMBOSS.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for EMBOSS
-# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/EMBOSS/EMBOSS.info b/academic/EMBOSS/EMBOSS.info
index 91ed13abbb..6cce29ea76 100644
--- a/academic/EMBOSS/EMBOSS.info
+++ b/academic/EMBOSS/EMBOSS.info
@@ -1,10 +1,10 @@
PRGNAM="EMBOSS"
VERSION="6.6.0"
HOMEPAGE="http://emboss.sourceforge.net/"
-DOWNLOAD="http://www.student.oulu.fi/~ppetrov/source/EMBOSS-6.6.0/EMBOSS-6.6.0.tar.gz"
+DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/EMBOSS/EMBOSS-6.6.0.tar.gz"
MD5SUM="cc3fca80cb0618deb10fa0d29fe90e4b"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/EMBOSS/slack-desc b/academic/EMBOSS/slack-desc
index ad3cd69da8..31f2203c71 100644
--- a/academic/EMBOSS/slack-desc
+++ b/academic/EMBOSS/slack-desc
@@ -13,7 +13,7 @@ EMBOSS: developed for the needs of the molecular biology (e.g. EMBnet)
EMBOSS: user community.
EMBOSS:
EMBOSS: References: /usr/doc/EMBOSS-6.6.0/References
-EMBOSS: Details: /usr/share/EMBOSS/doc
+EMBOSS: Details: /usr/share/EMBOSS/doc/
EMBOSS: Home: http://emboss.sourceforge.net/
EMBOSS:
EMBOSS:
diff --git a/academic/Gblocks/Gblocks.SlackBuild b/academic/Gblocks/Gblocks.SlackBuild
index 193de59137..2a71e48b91 100644
--- a/academic/Gblocks/Gblocks.SlackBuild
+++ b/academic/Gblocks/Gblocks.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for Gblocks
-# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/Gblocks/Gblocks.info b/academic/Gblocks/Gblocks.info
index f1eb256a8c..47bcb82997 100644
--- a/academic/Gblocks/Gblocks.info
+++ b/academic/Gblocks/Gblocks.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64="http://molevol.cmima.csic.es/castresana/Gblocks/Gblocks_Linux64
MD5SUM_x86_64="c2c752ae4cbfda0b8bf09e6662585252"
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/Gblocks/slack-desc b/academic/Gblocks/slack-desc
index 7399accea4..d0a4dbb64c 100644
--- a/academic/Gblocks/slack-desc
+++ b/academic/Gblocks/slack-desc
@@ -11,8 +11,8 @@ Gblocks:
Gblocks: Gblocks is a program that eliminates poorly aligned positions and
Gblocks: divergent regions of an alignment of DNA or protein sequences.
Gblocks:
-Gblocks: References: /usr/doc/Gblocks-$VERSION/References
Gblocks: Home: http://molevol.cmima.csic.es/castresana/Gblocks.html
+Gblocks: References: /usr/doc/Gblocks-0.91b/References
Gblocks:
Gblocks:
Gblocks:
diff --git a/academic/ImageJ/ImageJ.SlackBuild b/academic/ImageJ/ImageJ.SlackBuild
index c68d741a07..0ddbb80c51 100644
--- a/academic/ImageJ/ImageJ.SlackBuild
+++ b/academic/ImageJ/ImageJ.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for ImageJ
-# Copyright 2012-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2012-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/ImageJ/ImageJ.info b/academic/ImageJ/ImageJ.info
index a09e4c3a80..d1cf34a7a5 100644
--- a/academic/ImageJ/ImageJ.info
+++ b/academic/ImageJ/ImageJ.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/ImageJ/slack-desc b/academic/ImageJ/slack-desc
index f74d9aff79..eab74d7de4 100644
--- a/academic/ImageJ/slack-desc
+++ b/academic/ImageJ/slack-desc
@@ -11,9 +11,9 @@ ImageJ:
ImageJ: ImageJ is a Java image processing program inspired by NIH Image
ImageJ: for the Macintosh. It was designed with an open architecture that
ImageJ: provides extensibility via Java plugins. User-written plugins make
-ImageJ: it possible to solve almost any image processing or analysis problem.
+ImageJ: it possible to solve almost any image processing or analysis
+ImageJ: problem.
ImageJ:
ImageJ: Home: http://rsb.info.nih.gov/ij/
ImageJ:
ImageJ:
-ImageJ:
diff --git a/academic/PhyML/PhyML.SlackBuild b/academic/PhyML/PhyML.SlackBuild
index 3578b7288c..6c8ccdd3a4 100644
--- a/academic/PhyML/PhyML.SlackBuild
+++ b/academic/PhyML/PhyML.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for PhyML
-# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/PhyML/PhyML.info b/academic/PhyML/PhyML.info
index e37d35be73..dd1f897135 100644
--- a/academic/PhyML/PhyML.info
+++ b/academic/PhyML/PhyML.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/PhyML/slack-desc b/academic/PhyML/slack-desc
index 2d43cd602b..76f3459318 100644
--- a/academic/PhyML/slack-desc
+++ b/academic/PhyML/slack-desc
@@ -13,7 +13,7 @@ PhyML: from alignments of nucleotide or amino acid sequences. It provides a
PhyML: wide range of options that were designed to facilitate standard
PhyML: phylogenetic analyses.
PhyML:
-PhyML: References: /usr/doc/PhyML-$VERSION/References
PhyML: Home: http://code.google.com/p/phyml/
+PhyML: References: /usr/doc/PhyML-20131112/References
PhyML:
PhyML:
diff --git a/academic/QtiPlot/QtiPlot.SlackBuild b/academic/QtiPlot/QtiPlot.SlackBuild
index 719db33181..5a4468ea05 100644
--- a/academic/QtiPlot/QtiPlot.SlackBuild
+++ b/academic/QtiPlot/QtiPlot.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for QtiPlot
-# Copyright 2011-2012 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/QtiPlot/QtiPlot.info b/academic/QtiPlot/QtiPlot.info
index 5a92860da9..08ff9bc46c 100644
--- a/academic/QtiPlot/QtiPlot.info
+++ b/academic/QtiPlot/QtiPlot.info
@@ -3,7 +3,7 @@ VERSION="0.9.8.9"
HOMEPAGE="http://www.qtiplot.com/"
DOWNLOAD="http://sourceforge.net/projects/qtiplot.berlios/files/qtiplot-0.9.8.9.tar.bz2 \
http://sourceforge.net/projects/qtiplot.berlios/files/QTeXEngine-0.3-opensource.zip \
- http://www.student.oulu.fi/~ppetrov/source/importOPJ-20111106.tar.gz"
+ https://sourceforge.net/projects/sboppetrov/files/QtiPlot/importOPJ-20111106.tar.gz"
MD5SUM="652096a365851da3b5f6fefdcbe2aaec \
d1b234623770ec6209b14d1b5137f2f1 \
6f6925beb9e27f2ea0fbd01f23da548a"
@@ -11,4 +11,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="alglib muParser qt-assistant-compat tamu_anova"
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/aline/aline.SlackBuild b/academic/aline/aline.SlackBuild
index 469e0812b6..161ed68f3f 100644
--- a/academic/aline/aline.SlackBuild
+++ b/academic/aline/aline.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for aline
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/aline/aline.info b/academic/aline/aline.info
index 8bc94a0236..63f7ee3446 100644
--- a/academic/aline/aline.info
+++ b/academic/aline/aline.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="perl-tk"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/aline/slack-desc b/academic/aline/slack-desc
index 61662e1715..2941b28807 100644
--- a/academic/aline/slack-desc
+++ b/academic/aline/slack-desc
@@ -15,5 +15,5 @@ aline: which the user can then alter, embellish, markup etc to produce
aline: the kind of sequence figure commonly found in biochemical articles.
aline:
aline: Home: http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/
-aline: References: /usr/doc/aline-$VERSION/References
+aline: References: /usr/doc/aline-1.0.025/References
aline:
diff --git a/academic/amplicon/amplicon.SlackBuild b/academic/amplicon/amplicon.SlackBuild
index 588ea1115e..0ab897e091 100644
--- a/academic/amplicon/amplicon.SlackBuild
+++ b/academic/amplicon/amplicon.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for amplicon
-# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/amplicon/amplicon.info b/academic/amplicon/amplicon.info
index a9e2b10193..ef71481903 100644
--- a/academic/amplicon/amplicon.info
+++ b/academic/amplicon/amplicon.info
@@ -9,4 +9,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/amplicon/slack-desc b/academic/amplicon/slack-desc
index abc1d0d9f2..b3c5ea1add 100644
--- a/academic/amplicon/slack-desc
+++ b/academic/amplicon/slack-desc
@@ -14,6 +14,6 @@ amplicon: useful for designing 'group-specific' PCR primer sets that produce
amplicon: amplicons from a targer group of species, but not from other groups
amplicon: of species.
amplicon:
-amplicon: References: /usr/doc/amplicon-$VERSION/References
amplicon: Home: http://amplicon.sourceforge.net/
+amplicon: References: /usr/doc/amplicon-b09.1/References
amplicon:
diff --git a/academic/amplifx/amplifx.SlackBuild b/academic/amplifx/amplifx.SlackBuild
index b1b82d6e69..5fa2210e3a 100644
--- a/academic/amplifx/amplifx.SlackBuild
+++ b/academic/amplifx/amplifx.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for amplifx
-# Copyright 2014 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/amplifx/amplifx.info b/academic/amplifx/amplifx.info
index 72fe05f382..1ec2301b5b 100644
--- a/academic/amplifx/amplifx.info
+++ b/academic/amplifx/amplifx.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64="UNSUPPORTED"
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/archeopteryx/archeopteryx.SlackBuild b/academic/archeopteryx/archeopteryx.SlackBuild
index d4c812b0cd..bc74f234cd 100644
--- a/academic/archeopteryx/archeopteryx.SlackBuild
+++ b/academic/archeopteryx/archeopteryx.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for archeopteryx
-# Copyright 2014-2015 Petar Petrov petar.petrov@student.oulu.fi
+# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/archeopteryx/archeopteryx.info b/academic/archeopteryx/archeopteryx.info
index 324660a963..6c45f20adc 100644
--- a/academic/archeopteryx/archeopteryx.info
+++ b/academic/archeopteryx/archeopteryx.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/arka/arka.SlackBuild b/academic/arka/arka.SlackBuild
index bb68495fa0..eea4b48a41 100644
--- a/academic/arka/arka.SlackBuild
+++ b/academic/arka/arka.SlackBuild
@@ -1,12 +1,26 @@
#!/bin/sh
# Slackware build script for arka
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
-# hereby submitted to the public domain
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=arka
VERSION=${VERSION:-0.11}
diff --git a/academic/arka/arka.info b/academic/arka/arka.info
index 75d37bbfae..af925c9b4f 100644
--- a/academic/arka/arka.info
+++ b/academic/arka/arka.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="genpak"
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/arka/slack-desc b/academic/arka/slack-desc
index 96c992a71f..6313b592bb 100644
--- a/academic/arka/slack-desc
+++ b/academic/arka/slack-desc
@@ -12,8 +12,8 @@ arka: Arka is a program that serves as a graphical interface for the
arka: programs from the GenPak (GP) package and has some interesting
arka: functions on its own.
arka:
+arka: Home: http://www.bioinformatics.org/genpak/
arka:
arka:
arka:
arka:
-arka: Home: http://www.bioinformatics.org/genpak/
diff --git a/academic/bowtie/bowtie.SlackBuild b/academic/bowtie/bowtie.SlackBuild
index cb9ab8a4fc..0f5beae851 100644
--- a/academic/bowtie/bowtie.SlackBuild
+++ b/academic/bowtie/bowtie.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for bowtie
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/bowtie/bowtie.info b/academic/bowtie/bowtie.info
index 508462e5cc..49d8c838cb 100644
--- a/academic/bowtie/bowtie.info
+++ b/academic/bowtie/bowtie.info
@@ -1,10 +1,10 @@
PRGNAM="bowtie"
VERSION="1.0.0"
HOMEPAGE="http://bowtie-bio.sourceforge.net/"
-DOWNLOAD="http://www.student.oulu.fi/~ppetrov/source/bowtie_1.0.0.orig.tar.gz"
+DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/bowtie/bowtie_1.0.0.orig.tar.gz"
MD5SUM="75d402c856b64958ec4bc0f67d011eb9"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/bowtie2/bowtie2.SlackBuild b/academic/bowtie2/bowtie2.SlackBuild
index 7fa6ff270e..43c3392d90 100644
--- a/academic/bowtie2/bowtie2.SlackBuild
+++ b/academic/bowtie2/bowtie2.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for bowtie2
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/bowtie2/bowtie2.info b/academic/bowtie2/bowtie2.info
index 9bbff6120d..aca3d2fbd6 100644
--- a/academic/bowtie2/bowtie2.info
+++ b/academic/bowtie2/bowtie2.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/bwa/bwa.SlackBuild b/academic/bwa/bwa.SlackBuild
index 38cfa8df0d..61bd05e400 100644
--- a/academic/bwa/bwa.SlackBuild
+++ b/academic/bwa/bwa.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for bwa
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/bwa/bwa.info b/academic/bwa/bwa.info
index df22cf74e3..825e7bb475 100644
--- a/academic/bwa/bwa.info
+++ b/academic/bwa/bwa.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/cap3/cap3.SlackBuild b/academic/cap3/cap3.SlackBuild
index 83065a2c8d..12ee761b1e 100644
--- a/academic/cap3/cap3.SlackBuild
+++ b/academic/cap3/cap3.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for cap3
-# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/cap3/cap3.info b/academic/cap3/cap3.info
index c0186331d1..d72fab6233 100644
--- a/academic/cap3/cap3.info
+++ b/academic/cap3/cap3.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64="http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar"
MD5SUM_x86_64="2d924766f6e8b5cf03bd2db81016d821"
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/cap3/slack-desc b/academic/cap3/slack-desc
index 8940c92865..a508a9c35d 100644
--- a/academic/cap3/slack-desc
+++ b/academic/cap3/slack-desc
@@ -15,5 +15,5 @@ cap3: between reads, construction of multiple sequence alignments of reads,
cap3: and generation of consensus sequences.
cap3:
cap3: Home: http://seq.cs.iastate.edu/
-cap3: References: /usr/doc/cap3-$VERSION/References
+cap3: References: /usr/doc/cap3-20091029/References
cap3:
diff --git a/academic/cistrome-CEAS/cistrome-CEAS.SlackBuild b/academic/cistrome-CEAS/cistrome-CEAS.SlackBuild
index a06e7ed225..b4bafb5928 100644
--- a/academic/cistrome-CEAS/cistrome-CEAS.SlackBuild
+++ b/academic/cistrome-CEAS/cistrome-CEAS.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for cistrome-CEAS
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/cistrome-CEAS/cistrome-CEAS.info b/academic/cistrome-CEAS/cistrome-CEAS.info
index a61c58a620..cb11446bc0 100644
--- a/academic/cistrome-CEAS/cistrome-CEAS.info
+++ b/academic/cistrome-CEAS/cistrome-CEAS.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/cistrome-MACS/cistrome-MACS.SlackBuild b/academic/cistrome-MACS/cistrome-MACS.SlackBuild
index f22c48b227..9711808365 100644
--- a/academic/cistrome-MACS/cistrome-MACS.SlackBuild
+++ b/academic/cistrome-MACS/cistrome-MACS.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for cistrome-MACS
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/cistrome-MACS/cistrome-MACS.info b/academic/cistrome-MACS/cistrome-MACS.info
index 6b12d67dd3..e5f0b603c3 100644
--- a/academic/cistrome-MACS/cistrome-MACS.info
+++ b/academic/cistrome-MACS/cistrome-MACS.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/cistrome-MACS/slack-desc b/academic/cistrome-MACS/slack-desc
index 82b067d296..a21ee201a3 100644
--- a/academic/cistrome-MACS/slack-desc
+++ b/academic/cistrome-MACS/slack-desc
@@ -16,4 +16,4 @@ cistrome-MACS: based Analysis of ChIP-Seq (MACS) on short reads sequencers such
cistrome-MACS: as Genome Analyzer (Illumina / Solexa).
cistrome-MACS:
cistrome-MACS: Home: http://liulab.dfci.harvard.edu/MACS/
-cistrome-MACS: References: /usr/doc/cistrome-MACS-1.4.2/references
+cistrome-MACS: References: /usr/doc/cistrome-MACS-1.4.2/References
diff --git a/academic/clustalo/clustalo.SlackBuild b/academic/clustalo/clustalo.SlackBuild
index 3ed997060f..8990c6c63e 100644
--- a/academic/clustalo/clustalo.SlackBuild
+++ b/academic/clustalo/clustalo.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for clustalo
-# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/clustalo/clustalo.info b/academic/clustalo/clustalo.info
index e43a00d763..e76ec88488 100644
--- a/academic/clustalo/clustalo.info
+++ b/academic/clustalo/clustalo.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="argtable"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/clustalo/slack-desc b/academic/clustalo/slack-desc
index 502128cf0d..6f180c0cff 100644
--- a/academic/clustalo/slack-desc
+++ b/academic/clustalo/slack-desc
@@ -14,6 +14,6 @@ clustalo: It offers a significant increase in scalability over previous
clustalo: versions, allowing hundreds of thousands of sequences to be
clustalo: aligned in only a few hours.
clustalo:
-clustalo: References: /usr/doc/clustalo-$VERSION/References
clustalo: Home: http://www.clustal.org/omega/
+clustalo: References: /usr/doc/clustalo-1.2.1/References
clustalo:
diff --git a/academic/clustalw/clustalw.SlackBuild b/academic/clustalw/clustalw.SlackBuild
index 7a3d4fcb00..17f5f46bab 100644
--- a/academic/clustalw/clustalw.SlackBuild
+++ b/academic/clustalw/clustalw.SlackBuild
@@ -1,12 +1,26 @@
#!/bin/sh
# Slackware build script for clustalw
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
-# hereby submitted to the public domain
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=clustalw
VERSION=${VERSION:-2.1}
diff --git a/academic/clustalw/clustalw.info b/academic/clustalw/clustalw.info
index 92e755b6a2..c7af47632b 100644
--- a/academic/clustalw/clustalw.info
+++ b/academic/clustalw/clustalw.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/clustalw/slack-desc b/academic/clustalw/slack-desc
index 2750b3fffb..7dee88863a 100644
--- a/academic/clustalw/slack-desc
+++ b/academic/clustalw/slack-desc
@@ -8,12 +8,12 @@
|-----handy-ruler------------------------------------------------------|
clustalw: clustalw (Multiple Sequence Alignment)
clustalw:
-clustalw: CLUSTAL W: improving the sensitivity of progressive multiple sequence
-clustalw: alignment through sequence weighting, position-specific gap penalties
-clustalw: and weight matrix choice.
+clustalw: CLUSTAL W: improving the sensitivity of progressive multiple
+clustalw: sequence alignment through sequence weighting, position-specific
+clustalw: gap penalties and weight matrix choice.
clustalw:
+clustalw: Home: http://www.clustal.org/
+clustalw: References: /usr/doc/clustalw-2.1/References
clustalw:
clustalw:
clustalw:
-clustalw: References: /usr/doc/clustalw-$VERSION/References
-clustalw: Home: http://www.clustal.org/
diff --git a/academic/clustalx/clustalx.SlackBuild b/academic/clustalx/clustalx.SlackBuild
index e6aca5a25f..0e0932e730 100644
--- a/academic/clustalx/clustalx.SlackBuild
+++ b/academic/clustalx/clustalx.SlackBuild
@@ -1,17 +1,29 @@
#!/bin/sh
# Slackware build script for clustalx
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
-# hereby submitted to the public domain
-# Based on the clustalx PKGBUILD from Archlinux AUR
-# (http://aur.archlinux.org/packages.php?ID=25080).
-# PKGBUILD submitter is mickelliot and maintainer is
-# machoo02. Thank you!
-
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+# With help from http://aur.archlinux.org/packages.php?ID=25080
+# PKGBUILD submitter is mickelliot and maintainer is machoo02
PRGNAM=clustalx
VERSION=${VERSION:-2.1}
diff --git a/academic/clustalx/clustalx.info b/academic/clustalx/clustalx.info
index 3a958abfde..e50629a5ac 100644
--- a/academic/clustalx/clustalx.info
+++ b/academic/clustalx/clustalx.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/clustalx/slack-desc b/academic/clustalx/slack-desc
index a3f4888ba3..88a97ef6ac 100644
--- a/academic/clustalx/slack-desc
+++ b/academic/clustalx/slack-desc
@@ -12,8 +12,8 @@ clustalx: A GUI interface for the ClustalW multiple sequence alignment
clustalx: program. It provides an integrated environment for performing
clustalx: multiple sequence- and profile-alignments to analyse the results.
clustalx:
+clustalx: Home: http://www.clustal.org/
+clustalx: References: /usr/doc/clustalx-2.1/References
clustalx:
clustalx:
clustalx:
-clustalx: References: /usr/doc/clustalx-$VERSION/References
-clustalx: Home: http://www.clustal.org/
diff --git a/academic/cufflinks/cufflinks.SlackBuild b/academic/cufflinks/cufflinks.SlackBuild
index db01c787c7..8ddadb1e43 100644
--- a/academic/cufflinks/cufflinks.SlackBuild
+++ b/academic/cufflinks/cufflinks.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for cufflinks
-# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/cufflinks/cufflinks.info b/academic/cufflinks/cufflinks.info
index 6dcf6aa08a..e6bc02b301 100644
--- a/academic/cufflinks/cufflinks.info
+++ b/academic/cufflinks/cufflinks.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="samtools"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/cutadapt/cutadapt.SlackBuild b/academic/cutadapt/cutadapt.SlackBuild
index a7726bb702..0ecea5813f 100644
--- a/academic/cutadapt/cutadapt.SlackBuild
+++ b/academic/cutadapt/cutadapt.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for cutadapt
-# Copyright 2015 Petar Petrov petar.petrov@student.oulu.fi
+# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/cutadapt/cutadapt.info b/academic/cutadapt/cutadapt.info
index 69903433f9..fb8cc50d6b 100644
--- a/academic/cutadapt/cutadapt.info
+++ b/academic/cutadapt/cutadapt.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/cutadapt/slack-desc b/academic/cutadapt/slack-desc
index a5720ff310..d707e36062 100644
--- a/academic/cutadapt/slack-desc
+++ b/academic/cutadapt/slack-desc
@@ -13,7 +13,7 @@ cutadapt: tails and other types of unwanted sequence from your high-
cutadapt: throughput sequencing reads.
cutadapt:
cutadapt: Home: https://pypi.python.org/pypi/cutadapt/
-cutadapt: Reference: /usr/doc/cutadapt-1.9/CITATION
+cutadapt: References: /usr/doc/cutadapt-1.9/CITATION
cutadapt:
cutadapt:
cutadapt:
diff --git a/academic/finchtv/finchtv.SlackBuild b/academic/finchtv/finchtv.SlackBuild
index f758937d3b..09cad345ec 100644
--- a/academic/finchtv/finchtv.SlackBuild
+++ b/academic/finchtv/finchtv.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for finchtv
-# Copyright 2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/finchtv/finchtv.info b/academic/finchtv/finchtv.info
index 97df56fc94..12d23cc3d2 100644
--- a/academic/finchtv/finchtv.info
+++ b/academic/finchtv/finchtv.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@oulu.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/gchemutils/gchemutils.SlackBuild b/academic/gchemutils/gchemutils.SlackBuild
index 61a7d868f3..5f25fb0914 100644
--- a/academic/gchemutils/gchemutils.SlackBuild
+++ b/academic/gchemutils/gchemutils.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for gchemutils
-# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/gchemutils/gchemutils.info b/academic/gchemutils/gchemutils.info
index 2dd80c8e6d..7848ec16bf 100644
--- a/academic/gchemutils/gchemutils.info
+++ b/academic/gchemutils/gchemutils.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="goffice chemical-mime-data bodr gtkglext openbabel"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/gelemental/gelemental.SlackBuild b/academic/gelemental/gelemental.SlackBuild
index 013d8ba5b6..22beaf7d9c 100644
--- a/academic/gelemental/gelemental.SlackBuild
+++ b/academic/gelemental/gelemental.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for gelemental
-# Copyright 2011-2012 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/gelemental/gelemental.info b/academic/gelemental/gelemental.info
index 890335ed84..26ae0cb79e 100644
--- a/academic/gelemental/gelemental.info
+++ b/academic/gelemental/gelemental.info
@@ -1,10 +1,10 @@
PRGNAM="gelemental"
VERSION="1.2.0"
HOMEPAGE="http://freecode.com/projects/gelemental"
-DOWNLOAD="http://ftp.debian.org/debian/pool/main/g/gelemental/gelemental_1.2.0.orig.tar.gz"
+DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/gelemental/gelemental_1.2.0.orig.tar.gz"
MD5SUM="94cc73c76a02f75598f579ff57696805"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/geneconv/geneconv.SlackBuild b/academic/geneconv/geneconv.SlackBuild
index 7428bc8b9c..6deb7a5204 100644
--- a/academic/geneconv/geneconv.SlackBuild
+++ b/academic/geneconv/geneconv.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for geneconv
-# Copyright 2014 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/geneconv/geneconv.info b/academic/geneconv/geneconv.info
index 00baacd720..344aef3bea 100644
--- a/academic/geneconv/geneconv.info
+++ b/academic/geneconv/geneconv.info
@@ -11,4 +11,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/genometools/genometools.SlackBuild b/academic/genometools/genometools.SlackBuild
index 876198a7f3..d91a7dfd6f 100644
--- a/academic/genometools/genometools.SlackBuild
+++ b/academic/genometools/genometools.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for genometools
-# Copyright 2014-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/genometools/genometools.info b/academic/genometools/genometools.info
index 9ba7c4dc6f..005991dd50 100644
--- a/academic/genometools/genometools.info
+++ b/academic/genometools/genometools.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/genpak/genpak.SlackBuild b/academic/genpak/genpak.SlackBuild
index 93763b86d3..9cf201f994 100644
--- a/academic/genpak/genpak.SlackBuild
+++ b/academic/genpak/genpak.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for genpak
-# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/genpak/genpak.info b/academic/genpak/genpak.info
index b1c8cf29c8..98aa6c1102 100644
--- a/academic/genpak/genpak.info
+++ b/academic/genpak/genpak.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/gp2fasta/gp2fasta.SlackBuild b/academic/gp2fasta/gp2fasta.SlackBuild
index 0b86ab29e7..ade5c82653 100644
--- a/academic/gp2fasta/gp2fasta.SlackBuild
+++ b/academic/gp2fasta/gp2fasta.SlackBuild
@@ -1,17 +1,31 @@
#!/bin/sh
# Slackware build script for gp2fasta
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
-# hereby submitted to the public domain
+
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
# The icon used by the gp2fasta.desktop file is taken from
# http://kde-look.org/content/show.php/Fasta+icons?content=54012
# Author is Luis-Miguel Rodriguez. Thank you!
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
-
PRGNAM=gp2fasta
VERSION=${VERSION:-0.2}
BUILD=${BUILD:-1}
diff --git a/academic/gp2fasta/gp2fasta.info b/academic/gp2fasta/gp2fasta.info
index b52ad7f953..6d1c7bbdb9 100644
--- a/academic/gp2fasta/gp2fasta.info
+++ b/academic/gp2fasta/gp2fasta.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/gp2fasta/slack-desc b/academic/gp2fasta/slack-desc
index 02742d2ada..3d8bd8cae8 100644
--- a/academic/gp2fasta/slack-desc
+++ b/academic/gp2fasta/slack-desc
@@ -12,8 +12,8 @@ gp2fasta: GP2fasta is a QT application converting gp files from NCBI GenPept
gp2fasta: format to fasta. Its main purpose is to create fasta files with
gp2fasta: short, but still accurate headers for sequence.
gp2fasta:
+gp2fasta: Home: http://gp2fasta.ovh.org
gp2fasta:
gp2fasta:
gp2fasta:
gp2fasta:
-gp2fasta: Home: http://gp2fasta.ovh.org
diff --git a/academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild b/academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild
index 17cf7e9e0b..3f07c62be6 100644
--- a/academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild
+++ b/academic/ij-plugins-LOCI/ij-plugins-LOCI.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for ij-plugins-LOCI
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/ij-plugins-LOCI/ij-plugins-LOCI.info b/academic/ij-plugins-LOCI/ij-plugins-LOCI.info
index 382f05e8b4..c012a8af8e 100644
--- a/academic/ij-plugins-LOCI/ij-plugins-LOCI.info
+++ b/academic/ij-plugins-LOCI/ij-plugins-LOCI.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="ImageJ"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild b/academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild
index 68aa096c88..59f1ffd758 100644
--- a/academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild
+++ b/academic/ij-plugins-UCSD/ij-plugins-UCSD.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for ij-plugins-UCSD
-# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/ij-plugins-UCSD/ij-plugins-UCSD.info b/academic/ij-plugins-UCSD/ij-plugins-UCSD.info
index a3e19968a4..808701cb61 100644
--- a/academic/ij-plugins-UCSD/ij-plugins-UCSD.info
+++ b/academic/ij-plugins-UCSD/ij-plugins-UCSD.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="ImageJ"
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/io_lib/io_lib.SlackBuild b/academic/io_lib/io_lib.SlackBuild
index 8ca46acec4..1aa140804b 100644
--- a/academic/io_lib/io_lib.SlackBuild
+++ b/academic/io_lib/io_lib.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for io_lib
-# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/io_lib/io_lib.info b/academic/io_lib/io_lib.info
index 0a39fa7f59..3c808c6ee0 100644
--- a/academic/io_lib/io_lib.info
+++ b/academic/io_lib/io_lib.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/isoelectric-point/isoelectric-point.SlackBuild b/academic/isoelectric-point/isoelectric-point.SlackBuild
index 787c6e14af..dc96c2f792 100644
--- a/academic/isoelectric-point/isoelectric-point.SlackBuild
+++ b/academic/isoelectric-point/isoelectric-point.SlackBuild
@@ -1,12 +1,26 @@
#!/bin/sh
-# Slackware build script for isoelectric-point
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
-# hereby submitted to the public domain
-
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Slackware build script for isoelectrick-point
+
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=isoelectric-point
VERSION=${VERSION:-1.0}
diff --git a/academic/isoelectric-point/isoelectric-point.info b/academic/isoelectric-point/isoelectric-point.info
index 3b90a36171..88333bbc9e 100644
--- a/academic/isoelectric-point/isoelectric-point.info
+++ b/academic/isoelectric-point/isoelectric-point.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/isoelectric-point/slack-desc b/academic/isoelectric-point/slack-desc
index 009c5829e5..df2838b3bc 100644
--- a/academic/isoelectric-point/slack-desc
+++ b/academic/isoelectric-point/slack-desc
@@ -9,11 +9,11 @@
isoelectric-point: isoelectric-point (Isoelectric point calculator)
isoelectric-point:
isoelectric-point: A small application to calculate the isoelectric point of a
-isoelectric-point: protein. Additionally it outputs the molecular weight of the protein
-isoelectric-point: analysed.
+isoelectric-point: protein. Additionally it outputs the molecular weight of the
+isoelectric-point: protein analysed.
isoelectric-point:
+isoelectric-point: Home: http://isoelectric.ovh.org/
isoelectric-point:
isoelectric-point:
isoelectric-point:
isoelectric-point:
-isoelectric-point: Home: http://isoelectric.ovh.org/
diff --git a/academic/jalview/jalview.SlackBuild b/academic/jalview/jalview.SlackBuild
index 44978cdac4..dd3d0327c1 100644
--- a/academic/jalview/jalview.SlackBuild
+++ b/academic/jalview/jalview.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for jalview
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/jalview/jalview.info b/academic/jalview/jalview.info
index 1036a6e84e..55566539fd 100644
--- a/academic/jalview/jalview.info
+++ b/academic/jalview/jalview.info
@@ -9,4 +9,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk p7zip"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/lalnview/lalnview.SlackBuild b/academic/lalnview/lalnview.SlackBuild
index 1129c9fbd4..cb92a3bcc3 100644
--- a/academic/lalnview/lalnview.SlackBuild
+++ b/academic/lalnview/lalnview.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for lalnview
-# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/lalnview/lalnview.info b/academic/lalnview/lalnview.info
index 59e33ef455..fec4dc9630 100644
--- a/academic/lalnview/lalnview.info
+++ b/academic/lalnview/lalnview.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="PDFlib-Lite fltk"
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/lalnview/slack-desc b/academic/lalnview/slack-desc
index 3f5abc73f9..6fee662bd5 100644
--- a/academic/lalnview/slack-desc
+++ b/academic/lalnview/slack-desc
@@ -11,8 +11,8 @@ lalnview:
lalnview: LalnView is a graphical program for visualizing local alignments
lalnview: between two sequences (protein or nucleic acids).
lalnview:
-lalnview: References: /usr/doc/lalnview-$VERSION/References
lalnview: Home: http://pbil.univ-lyon1.fr/software/lalnview.html
+lalnview: References: /usr/doc/lalnview-3.0/References
lalnview:
lalnview:
lalnview:
diff --git a/academic/mafft/mafft.SlackBuild b/academic/mafft/mafft.SlackBuild
index 1417dbdf68..9e70afa362 100644
--- a/academic/mafft/mafft.SlackBuild
+++ b/academic/mafft/mafft.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for mafft
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/mafft/mafft.info b/academic/mafft/mafft.info
index 7edcae784f..e6030a3f08 100644
--- a/academic/mafft/mafft.info
+++ b/academic/mafft/mafft.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/mkDSSP/mkDSSP.SlackBuild b/academic/mkDSSP/mkDSSP.SlackBuild
index 3df9f702e4..4a0e714a2c 100644
--- a/academic/mkDSSP/mkDSSP.SlackBuild
+++ b/academic/mkDSSP/mkDSSP.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for mkDSSP
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/mkDSSP/mkDSSP.info b/academic/mkDSSP/mkDSSP.info
index b957869525..3f2ccdf323 100644
--- a/academic/mkDSSP/mkDSSP.info
+++ b/academic/mkDSSP/mkDSSP.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/mkDSSP/slack-desc b/academic/mkDSSP/slack-desc
index eefbaea9dc..a1c71a66cc 100644
--- a/academic/mkDSSP/slack-desc
+++ b/academic/mkDSSP/slack-desc
@@ -16,4 +16,4 @@ mkDSSP: that calculates DSSP entries from PDB entries. DSSP does not
mkDSSP: predict secondary structure.
mkDSSP:
mkDSSP: Home: http://swift.cmbi.ru.nl/gv/dssp/
-mkDSSP: References: /usr/doc/mkDSSP:-$VERSION/References
+mkDSSP: References: /usr/doc/mkDSSP:-2.2.1/References
diff --git a/academic/mrbayes/mrbayes.SlackBuild b/academic/mrbayes/mrbayes.SlackBuild
index ec6aeda4fa..e2c510cb99 100644
--- a/academic/mrbayes/mrbayes.SlackBuild
+++ b/academic/mrbayes/mrbayes.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for mrbayes
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/mrbayes/mrbayes.info b/academic/mrbayes/mrbayes.info
index 119b260bb2..0ac26e2633 100644
--- a/academic/mrbayes/mrbayes.info
+++ b/academic/mrbayes/mrbayes.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/muscle/muscle.SlackBuild b/academic/muscle/muscle.SlackBuild
index af816446d7..5a73e12824 100644
--- a/academic/muscle/muscle.SlackBuild
+++ b/academic/muscle/muscle.SlackBuild
@@ -1,12 +1,26 @@
#!/bin/sh
# Slackware build script for muscle
-# Written by Petar Petrov, <ppetrov@paju.oulu.fi> and
-# hereby submitted to the public domain
-# THIS SLACKBUILD IS DISTRIBUTETD IN THE HOPE OF BEING
-# USEFUL BUT WITHOUT ANY WARRANTY. THE AUTHOR IS _NOT_
-# RESPONSIBLE FOR ANY DAMAGE OR DATA LOSS CAUSED BY IT.
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
+# All rights reserved.
+#
+# Redistribution and use of this script, with or without modification, is
+# permitted provided that the following conditions are met:
+#
+# 1. Redistributions of this script must retain the above copyright
+# notice, this list of conditions and the following disclaimer.
+#
+# THIS SOFTWARE IS PROVIDED BY THE AUTHOR "AS IS" AND ANY EXPRESS OR IMPLIED
+# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
+# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
+# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
+# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
+# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
+# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
+# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=muscle
VERSION=${VERSION:-3.8.31}
diff --git a/academic/muscle/muscle.info b/academic/muscle/muscle.info
index 96a842c73f..1167cc14bf 100644
--- a/academic/muscle/muscle.info
+++ b/academic/muscle/muscle.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/muscle/slack-desc b/academic/muscle/slack-desc
index 2eda19a73e..5e4e7da441 100644
--- a/academic/muscle/slack-desc
+++ b/academic/muscle/slack-desc
@@ -13,7 +13,7 @@ muscle: or nucleotide sequences. A range of options is provided that give
muscle: you the choice of optimizing accuracy, speed, or some compromise
muscle: between the two.
muscle:
+muscle: Home: http://www.drive5.com/muscle/
+muscle: References: /usr/doc/muscle-3.8.31/References
muscle:
muscle:
-muscle: References: /usr/doc/muscle-$VERSION/References
-muscle: Home: http://www.drive5.com/muscle/
diff --git a/academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild b/academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild
index cde0c8bf55..83d1cbe07b 100644
--- a/academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild
+++ b/academic/ncbi-blast-plus/ncbi-blast-plus.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for ncbi-blast-plus
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/ncbi-blast-plus/ncbi-blast-plus.info b/academic/ncbi-blast-plus/ncbi-blast-plus.info
index a63ed3166c..8513677795 100644
--- a/academic/ncbi-blast-plus/ncbi-blast-plus.info
+++ b/academic/ncbi-blast-plus/ncbi-blast-plus.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64="ftp://ftp.ncbi.nih.gov/blast/executables/blast+/2.2.31/ncbi-bla
MD5SUM_x86_64="ae789a5bfb523cef95ac40e5a6b1929e"
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/ncbi-blast/ncbi-blast.SlackBuild b/academic/ncbi-blast/ncbi-blast.SlackBuild
index 69e71a1c44..aa8dc14e5d 100644
--- a/academic/ncbi-blast/ncbi-blast.SlackBuild
+++ b/academic/ncbi-blast/ncbi-blast.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for ncbi-blast
-# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/ncbi-blast/ncbi-blast.info b/academic/ncbi-blast/ncbi-blast.info
index 9d78698777..f1f0cc6bff 100644
--- a/academic/ncbi-blast/ncbi-blast.info
+++ b/academic/ncbi-blast/ncbi-blast.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64="ftp://ftp.ncbi.nih.gov/blast/executables/release/2.2.26/blast-2
MD5SUM_x86_64="809798a912f4fb37f62406201456df67"
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/paml/paml.SlackBuild b/academic/paml/paml.SlackBuild
index 5c3bc89847..5ad919580d 100644
--- a/academic/paml/paml.SlackBuild
+++ b/academic/paml/paml.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for paml
-# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/paml/paml.info b/academic/paml/paml.info
index 4b0a5a9d45..c3b51a2f0f 100644
--- a/academic/paml/paml.info
+++ b/academic/paml/paml.info
@@ -9,4 +9,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/pamlX/pamlX.SlackBuild b/academic/pamlX/pamlX.SlackBuild
index d725e7b7ca..acf8840b42 100644
--- a/academic/pamlX/pamlX.SlackBuild
+++ b/academic/pamlX/pamlX.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for pamlX
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/pamlX/pamlX.info b/academic/pamlX/pamlX.info
index cbb22fb430..7e9ac1b1af 100644
--- a/academic/pamlX/pamlX.info
+++ b/academic/pamlX/pamlX.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="paml"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/perlprimer/perlprimer.SlackBuild b/academic/perlprimer/perlprimer.SlackBuild
index 345d8156bc..182c189b73 100644
--- a/academic/perlprimer/perlprimer.SlackBuild
+++ b/academic/perlprimer/perlprimer.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for perlprimer
-# Copyright 2011-2014 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/perlprimer/perlprimer.info b/academic/perlprimer/perlprimer.info
index 239cbcedc6..abf42fdaf6 100644
--- a/academic/perlprimer/perlprimer.info
+++ b/academic/perlprimer/perlprimer.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="libwww-perl perl-tk"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/perlprimer/slack-desc b/academic/perlprimer/slack-desc
index 1ceca83edb..76f45a1ded 100644
--- a/academic/perlprimer/slack-desc
+++ b/academic/perlprimer/slack-desc
@@ -13,7 +13,7 @@ perlprimer: that designs primers for standard PCR, bisulphite PCR, real-time PCR
perlprimer: (QPCR) and sequencing. It aims to automate and simplify the process
perlprimer: of primer design.
perlprimer:
-perlprimer: References: /usr/doc/perlprimer-$VERSION/References
perlprimer: Home: http://perlprimer.sourceforge.net/
+perlprimer: References: /usr/doc/perlprimer-1.1.21/References
perlprimer:
perlprimer:
diff --git a/academic/plasmidomics/plasmidomics.SlackBuild b/academic/plasmidomics/plasmidomics.SlackBuild
index 265750c453..a437ad3637 100644
--- a/academic/plasmidomics/plasmidomics.SlackBuild
+++ b/academic/plasmidomics/plasmidomics.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for plasmidomics
-# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/plasmidomics/plasmidomics.info b/academic/plasmidomics/plasmidomics.info
index 129cd37f9a..268ea5fbbd 100644
--- a/academic/plasmidomics/plasmidomics.info
+++ b/academic/plasmidomics/plasmidomics.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/primer3/primer3.SlackBuild b/academic/primer3/primer3.SlackBuild
index 94ea102563..6d332e60d5 100644
--- a/academic/primer3/primer3.SlackBuild
+++ b/academic/primer3/primer3.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for primer3
-# Copyright 2011-2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/primer3/primer3.info b/academic/primer3/primer3.info
index 59d1388426..0782ab7c6d 100644
--- a/academic/primer3/primer3.info
+++ b/academic/primer3/primer3.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/primer3/slack-desc b/academic/primer3/slack-desc
index c7a0de5b48..ecda61a417 100644
--- a/academic/primer3/slack-desc
+++ b/academic/primer3/slack-desc
@@ -14,6 +14,6 @@ primer3: ubiquitous tool in genetics and molecular biology. Primer3 can also
primer3: design hybridization probes and sequencing primers.
primer3:
primer3: Home: http://primer3.sourceforge.net/
-primer3: References: /usr/doc/primer3-$VERSION/References
+primer3: References: /usr/doc/primer3-2.3.6/References
primer3:
primer3:
diff --git a/academic/samtools/samtools.SlackBuild b/academic/samtools/samtools.SlackBuild
index a3c0e2d1a7..02dff9fbbe 100644
--- a/academic/samtools/samtools.SlackBuild
+++ b/academic/samtools/samtools.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for samtools
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/samtools/samtools.info b/academic/samtools/samtools.info
index 51a89dca1e..79136533ae 100644
--- a/academic/samtools/samtools.info
+++ b/academic/samtools/samtools.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/seaview/seaview.SlackBuild b/academic/seaview/seaview.SlackBuild
index de4b13147b..0f310048fc 100644
--- a/academic/seaview/seaview.SlackBuild
+++ b/academic/seaview/seaview.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for seaview
-# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/seaview/seaview.info b/academic/seaview/seaview.info
index a1b90cf5f9..4ec273720f 100644
--- a/academic/seaview/seaview.info
+++ b/academic/seaview/seaview.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="fltk13 PDFlib-Lite Gblocks PhyML clustalo muscle"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/sequence-analysis/sequence-analysis.SlackBuild b/academic/sequence-analysis/sequence-analysis.SlackBuild
index 03a62d71d7..2db816ff72 100644
--- a/academic/sequence-analysis/sequence-analysis.SlackBuild
+++ b/academic/sequence-analysis/sequence-analysis.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for sequence-analysis
-# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/sequence-analysis/sequence-analysis.info b/academic/sequence-analysis/sequence-analysis.info
index fe94933976..d5e7228042 100644
--- a/academic/sequence-analysis/sequence-analysis.info
+++ b/academic/sequence-analysis/sequence-analysis.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/sequence-analysis/slack-desc b/academic/sequence-analysis/slack-desc
index c1daa35077..bc78bdddb3 100644
--- a/academic/sequence-analysis/slack-desc
+++ b/academic/sequence-analysis/slack-desc
@@ -10,10 +10,10 @@ sequence-analysis: sequence-analysis (Biologic sequences analysis)
sequence-analysis:
sequence-analysis: A collage of coding projects for biologic sequences analysis.
sequence-analysis:
+sequence-analysis: Home: http://informagen.com/SA/
sequence-analysis:
sequence-analysis:
sequence-analysis:
sequence-analysis:
sequence-analysis:
sequence-analysis:
-sequence-analysis: Home: http://informagen.com/SA/
diff --git a/academic/snpEff/snpEff.SlackBuild b/academic/snpEff/snpEff.SlackBuild
index f72bdb308d..b3bacb044c 100644
--- a/academic/snpEff/snpEff.SlackBuild
+++ b/academic/snpEff/snpEff.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for snpEff
-# Copyright 2015 Petar Petrov petar.petrov@student.oulu.fi
+# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/snpEff/snpEff.info b/academic/snpEff/snpEff.info
index bc80b9cc38..2ab219a48e 100644
--- a/academic/snpEff/snpEff.info
+++ b/academic/snpEff/snpEff.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="jdk"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/spidey/spidey.SlackBuild b/academic/spidey/spidey.SlackBuild
index 5a31c4f26a..e9ea109df7 100644
--- a/academic/spidey/spidey.SlackBuild
+++ b/academic/spidey/spidey.SlackBuild
@@ -1,6 +1,6 @@
#!/bin/sh
-# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/spidey/spidey.info b/academic/spidey/spidey.info
index 3a21a46c7a..1ea84ac7d4 100644
--- a/academic/spidey/spidey.info
+++ b/academic/spidey/spidey.info
@@ -1,10 +1,10 @@
PRGNAM="spidey"
VERSION="20060601"
HOMEPAGE="http://www.ncbi.nlm.nih.gov/spidey/index.html"
-DOWNLOAD="ftp://ftp.ncbi.nih.gov/pub/wheelan/Spidey/spidey.linux.gz"
+DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/spidey/spidey.linux.gz"
MD5SUM="2e56ef2e4fcf57eca266fb1b3bb56c7e"
-DOWNLOAD_x86_64="http://www.student.oulu.fi/~ppetrov/source/spidey.linux.64.gz"
+DOWNLOAD_x86_64="https://sourceforge.net/projects/sboppetrov/files/spidey/spidey.linux.64.gz"
MD5SUM_x86_64="79f1f95976346e0d0f5c7f717deac176"
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/squizz/squizz.SlackBuild b/academic/squizz/squizz.SlackBuild
index 8e7aa632ac..2104146b30 100644
--- a/academic/squizz/squizz.SlackBuild
+++ b/academic/squizz/squizz.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for squizz
-# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/squizz/squizz.info b/academic/squizz/squizz.info
index ceb11c761d..8fb393c1d8 100644
--- a/academic/squizz/squizz.info
+++ b/academic/squizz/squizz.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/staden/slack-desc b/academic/staden/slack-desc
index 063d9a7532..dfe0102e2d 100644
--- a/academic/staden/slack-desc
+++ b/academic/staden/slack-desc
@@ -12,8 +12,8 @@ staden: The programs of the Staden package offer excellent and fully
staden: developed set of DNA sequence assembly, editing, analysis
staden: tools and more.
staden:
-staden: Homepage: http://staden.sourceforge.net/
-staden:
+staden: Home: http://staden.sourceforge.net/
+staden: References: /usr/doc/staden-2.0.0b10/References
staden:
staden:
staden:
diff --git a/academic/staden/staden.SlackBuild b/academic/staden/staden.SlackBuild
index dce45900e2..8eba659af0 100644
--- a/academic/staden/staden.SlackBuild
+++ b/academic/staden/staden.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for staden
-# Copyright 2011-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/staden/staden.info b/academic/staden/staden.info
index 15238270ef..9675a78e66 100644
--- a/academic/staden/staden.info
+++ b/academic/staden/staden.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="io_lib tklib"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/t_coffee/t_coffee.SlackBuild b/academic/t_coffee/t_coffee.SlackBuild
index c39a83cc95..7329c61e2f 100644
--- a/academic/t_coffee/t_coffee.SlackBuild
+++ b/academic/t_coffee/t_coffee.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for t_coffee
-# Copyright 2013-2014 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/t_coffee/t_coffee.info b/academic/t_coffee/t_coffee.info
index 5f78b0c2bc..129a6c258d 100644
--- a/academic/t_coffee/t_coffee.info
+++ b/academic/t_coffee/t_coffee.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/tabix/tabix.SlackBuild b/academic/tabix/tabix.SlackBuild
index 6daf2a6aed..017733aaa0 100644
--- a/academic/tabix/tabix.SlackBuild
+++ b/academic/tabix/tabix.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for tabix
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/tabix/tabix.info b/academic/tabix/tabix.info
index c0a47ee631..bac2016304 100644
--- a/academic/tabix/tabix.info
+++ b/academic/tabix/tabix.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/topdraw/topdraw.SlackBuild b/academic/topdraw/topdraw.SlackBuild
index 4a74c94c84..1a48ba94fa 100644
--- a/academic/topdraw/topdraw.SlackBuild
+++ b/academic/topdraw/topdraw.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for topdraw
-# Copyright 2013 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/topdraw/topdraw.info b/academic/topdraw/topdraw.info
index 0119d2ae53..caaad940bb 100644
--- a/academic/topdraw/topdraw.info
+++ b/academic/topdraw/topdraw.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/tophat/tophat.SlackBuild b/academic/tophat/tophat.SlackBuild
index 88b0fda64e..4d4d306fc8 100644
--- a/academic/tophat/tophat.SlackBuild
+++ b/academic/tophat/tophat.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for tophat
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/tophat/tophat.info b/academic/tophat/tophat.info
index 45e1fcb687..e7d9aafd50 100644
--- a/academic/tophat/tophat.info
+++ b/academic/tophat/tophat.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/treeview/slack-desc b/academic/treeview/slack-desc
index b2988fbd35..32c744d759 100644
--- a/academic/treeview/slack-desc
+++ b/academic/treeview/slack-desc
@@ -11,8 +11,8 @@ treeview:
treeview: TreeView X provides a simple way to view the contents of a NEXUS,
treeview: PHYLIP, Hennig86, Clustal, or other format tree file.
treeview:
-treeview: References: /usr/doc/treeview-$VERSION/References
treeview: Home: http://code.google.com/p/treeviewx/
+treeview: References: /usr/doc/treeview-0.5/References
treeview:
treeview:
treeview:
diff --git a/academic/treeview/treeview.SlackBuild b/academic/treeview/treeview.SlackBuild
index 6a06e3b943..1465f26fae 100644
--- a/academic/treeview/treeview.SlackBuild
+++ b/academic/treeview/treeview.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for treeview
-# Copyright 2011 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/treeview/treeview.info b/academic/treeview/treeview.info
index 0189232e2c..8310833f45 100644
--- a/academic/treeview/treeview.info
+++ b/academic/treeview/treeview.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="wxPython"
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/ucsc-blat/slack-desc b/academic/ucsc-blat/slack-desc
index cb6eff3cf2..032c6e31e2 100644
--- a/academic/ucsc-blat/slack-desc
+++ b/academic/ucsc-blat/slack-desc
@@ -15,5 +15,5 @@ ucsc-blat: alignments and 50 times faster for protein alignments at sensitivity
ucsc-blat: settings typically used when comparing vertebrate sequences.
ucsc-blat:
ucsc-blat: Home: http://www.kentinformatics.com/
-ucsc-blat: References:/usr/doc/ucsc-blat-$VERSION/References
+ucsc-blat: References:/usr/doc/ucsc-blat-34/References
ucsc-blat:
diff --git a/academic/ucsc-blat/ucsc-blat.SlackBuild b/academic/ucsc-blat/ucsc-blat.SlackBuild
index 0e5ad7b72f..c2a01b480f 100644
--- a/academic/ucsc-blat/ucsc-blat.SlackBuild
+++ b/academic/ucsc-blat/ucsc-blat.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for ucsc-blat
-# Copyright 2013 Petar Petrov, ppetrov@paju.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/ucsc-blat/ucsc-blat.info b/academic/ucsc-blat/ucsc-blat.info
index da78e80fff..4536220175 100644
--- a/academic/ucsc-blat/ucsc-blat.info
+++ b/academic/ucsc-blat/ucsc-blat.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64="http://hgwdev.cse.ucsc.edu/~kent/exe/opteron/blatSuite.34.zip"
MD5SUM_x86_64="bf9042aa85a04ce85b24cef11011faee"
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="ppetrov@paju.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/ugene/ugene.SlackBuild b/academic/ugene/ugene.SlackBuild
index 75a314a48c..63adecdde7 100644
--- a/academic/ugene/ugene.SlackBuild
+++ b/academic/ugene/ugene.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for ugene
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/ugene/ugene.info b/academic/ugene/ugene.info
index 567d9657f2..1bd33c04cd 100644
--- a/academic/ugene/ugene.info
+++ b/academic/ugene/ugene.info
@@ -1,10 +1,10 @@
PRGNAM="ugene"
VERSION="1.16.2"
HOMEPAGE="http://ugene.unipro.ru/"
-DOWNLOAD="http://pkgs.fedoraproject.org/lookaside/pkgs/ugene/ugene-1.16.2.tar.gz/b55a6f7194d6dd89469d9f2f4b92d8f1/ugene-1.16.2.tar.gz"
+DOWNLOAD="https://sourceforge.net/projects/sboppetrov/files/ugene/ugene-1.16.2.tar.gz"
MD5SUM="b55a6f7194d6dd89469d9f2f4b92d8f1"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/vcftools/vcftools.SlackBuild b/academic/vcftools/vcftools.SlackBuild
index 7cfe136df6..47c61c7f7b 100644
--- a/academic/vcftools/vcftools.SlackBuild
+++ b/academic/vcftools/vcftools.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for vcftools
-# Copyright 2013-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/vcftools/vcftools.info b/academic/vcftools/vcftools.info
index 9e3ee465af..5525a67373 100644
--- a/academic/vcftools/vcftools.info
+++ b/academic/vcftools/vcftools.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="tabix"
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"
diff --git a/academic/zotero/zotero.SlackBuild b/academic/zotero/zotero.SlackBuild
index 770b97944c..03a6cbaf06 100644
--- a/academic/zotero/zotero.SlackBuild
+++ b/academic/zotero/zotero.SlackBuild
@@ -1,8 +1,8 @@
#!/bin/sh
-# Slackware build script for Zotero
+# Slackware build script for zotero
-# Copyright 2014-2015 Petar Petrov, petar.petrov@student.oulu.fi
+# Copyright 2014-2016 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
diff --git a/academic/zotero/zotero.info b/academic/zotero/zotero.info
index a5ee7f0a76..fd4daa1d0d 100644
--- a/academic/zotero/zotero.info
+++ b/academic/zotero/zotero.info
@@ -7,4 +7,4 @@ DOWNLOAD_x86_64="https://download.zotero.org/standalone/4.0.28/Zotero-4.0.28_lin
MD5SUM_x86_64="55f743aa7c08ca16d933e91faf43a2fc"
REQUIRES=""
MAINTAINER="Petar Petrov"
-EMAIL="petar.petrov@student.oulu.fi"
+EMAIL="slackalaxy@gmail.com"