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author Petar Petrov <slackalaxy@gmail.com>2020-09-15 08:30:05 +0700
committer Willy Sudiarto Raharjo <willysr@slackbuilds.org>2020-09-15 08:30:05 +0700
commiteffa13b05f98341eee31e6b49b0e3320b4f9f037 (patch)
tree4690f4b48e562791f9045442898dd8b09b025456 /academic
parent72cb87498f165bdb8bf83eac615564232277bbba (diff)
downloadslackbuilds-effa13b05f98341eee31e6b49b0e3320b4f9f037.tar.gz
slackbuilds-effa13b05f98341eee31e6b49b0e3320b4f9f037.tar.xz
academic/bedtools: Updated for version 2.29.2.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/bedtools/bedtools.SlackBuild12
-rw-r--r--academic/bedtools/bedtools.info6
2 files changed, 7 insertions, 11 deletions
diff --git a/academic/bedtools/bedtools.SlackBuild b/academic/bedtools/bedtools.SlackBuild
index ee87fbbbe4..c29f69d3e2 100644
--- a/academic/bedtools/bedtools.SlackBuild
+++ b/academic/bedtools/bedtools.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for bedtools
-# Copyright 2014-2019 Petar Petrov slackalaxy@gmail.com
+# Copyright 2014-2020 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -24,7 +24,7 @@
PRGNAM=bedtools
DIRNAM=bedtools2
-VERSION=${VERSION:-2.28.0}
+VERSION=${VERSION:-2.29.2}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -70,11 +70,7 @@ find -L . \
\( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
-# Use our CFLAGS
-sed -i "/CXXFLAGS/s/=/+=/" Makefile
-
-CXXFLAGS="$SLKCFLAGS -std=c++11" \
-make
+CXXFLAGS="$SLKCFLAGS" make
# Install the binary and scripts
cd bin
@@ -91,7 +87,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
| cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
-cp -a LICENSE README.md RELEASE_HISTORY $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a LICENSE README.md $PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
mkdir -p $PKG/install
diff --git a/academic/bedtools/bedtools.info b/academic/bedtools/bedtools.info
index 8ebd0862f4..79634be6cb 100644
--- a/academic/bedtools/bedtools.info
+++ b/academic/bedtools/bedtools.info
@@ -1,8 +1,8 @@
PRGNAM="bedtools"
-VERSION="2.28.0"
+VERSION="2.29.2"
HOMEPAGE="http://bedtools.readthedocs.org/"
-DOWNLOAD="https://github.com/arq5x/bedtools2/releases/download/v2.28.0/bedtools-2.28.0.tar.gz"
-MD5SUM="611d55ab9f03a7ee0fa6639af7299acf"
+DOWNLOAD="https://github.com/arq5x/bedtools2/releases/download/v2.29.2/bedtools-2.29.2.tar.gz"
+MD5SUM="a600f2cd58768310cb8427eb1ae54c17"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES=""