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author Petar Petrov <slackalaxy@gmail.com>2017-04-16 23:52:18 +0100
committer Willy Sudiarto Raharjo <willysr@slackbuilds.org>2017-04-22 08:10:40 +0700
commit4f792d3ee4ce7c6fe08bfa1e26f9dd4944286cf6 (patch)
tree1071c0fdb289f9be515e002477dac07f043c9d2b /academic
parent7ab4740889c3b2a58d409a48379518a28bccdafb (diff)
downloadslackbuilds-4f792d3ee4ce7c6fe08bfa1e26f9dd4944286cf6.tar.gz
slackbuilds-4f792d3ee4ce7c6fe08bfa1e26f9dd4944286cf6.tar.xz
academic/vcftools: Updated for version 0.1.14_33_g1d27c24.
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/vcftools/README8
-rw-r--r--academic/vcftools/slack-desc2
-rw-r--r--academic/vcftools/vcftools.SlackBuild14
-rw-r--r--academic/vcftools/vcftools.info6
4 files changed, 15 insertions, 15 deletions
diff --git a/academic/vcftools/README b/academic/vcftools/README
index de03f3235e..2b9a3a4b53 100644
--- a/academic/vcftools/README
+++ b/academic/vcftools/README
@@ -11,8 +11,8 @@ compatibility with older versions.
If you make use of VCFtools in your research, the authors would
appreciate a citation of the following paper:
-The Variant Call Format and VCFtools,
-Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers,
-Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter,
-Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin
+The Variant Call Format and VCFtools,
+Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers,
+Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter,
+Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin
and 1000 Genomes Project Analysis Group, Bioinformatics, 2011
diff --git a/academic/vcftools/slack-desc b/academic/vcftools/slack-desc
index 3486224761..f991177ca4 100644
--- a/academic/vcftools/slack-desc
+++ b/academic/vcftools/slack-desc
@@ -15,5 +15,5 @@ vcftools: VCF files: validating, merging, comparing and calculate some
vcftools: basic population genetic statistics.
vcftools:
vcftools: Home: http://vcftools.sourceforge.net/
-vcftools: References: /usr/doc/vcftools-0.1.14_14_g2543f81/References
+vcftools: References: /usr/doc/vcftools-0.1.14_33_g1d27c24/References
vcftools:
diff --git a/academic/vcftools/vcftools.SlackBuild b/academic/vcftools/vcftools.SlackBuild
index 94df58aa84..59b194bf27 100644
--- a/academic/vcftools/vcftools.SlackBuild
+++ b/academic/vcftools/vcftools.SlackBuild
@@ -2,7 +2,7 @@
# Slackware build script for vcftools
-# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
+# Copyright 2013-2017 Petar Petrov slackalaxy@gmail.com
# All rights reserved.
#
# Redistribution and use of this script, with or without modification, is
@@ -23,15 +23,15 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=vcftools
-VERSION=${VERSION:-0.1.14_14_g2543f81}
+VERSION=${VERSION:-0.1.14_33_g1d27c24}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
-GITVER=2543f812d45755cbe46a1d5d6bbd16da6a55b0c5
+GITVER=1d27c245276cc9b10c4b20e1fedc5e4adfcc0123
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
- i?86) ARCH=i486 ;;
+ i?86) ARCH=i586 ;;
arm*) ARCH=arm ;;
*) ARCH=$( uname -m ) ;;
esac
@@ -42,8 +42,8 @@ TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
-if [ "$ARCH" = "i486" ]; then
- SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+if [ "$ARCH" = "i586" ]; then
+ SLKCFLAGS="-O2 -march=i586 -mtune=i686"
LIBDIRSUFFIX=""
elif [ "$ARCH" = "i686" ]; then
SLKCFLAGS="-O2 -march=i686 -mtune=i686"
@@ -83,7 +83,7 @@ CPPFLAGS="$SLKCFLAGS" \
--docdir=/usr/doc/$PRGNAM-$VERSION \
--build=$ARCH-slackware-linux
make
-make DESTDIR=$PKG install
+make DESTDIR=$PKG install PMDIR=share/perl5/vendor_perl
# Copy examples
mkdir -p $PKG/usr/share/$PRGNAM
diff --git a/academic/vcftools/vcftools.info b/academic/vcftools/vcftools.info
index 32903bedbb..9b1265f2b7 100644
--- a/academic/vcftools/vcftools.info
+++ b/academic/vcftools/vcftools.info
@@ -1,8 +1,8 @@
PRGNAM="vcftools"
-VERSION="0.1.14_14_g2543f81"
+VERSION="0.1.14_33_g1d27c24"
HOMEPAGE="https://vcftools.github.io/"
-DOWNLOAD="https://github.com/vcftools/vcftools/archive/2543f81/vcftools-2543f812d45755cbe46a1d5d6bbd16da6a55b0c5.tar.gz"
-MD5SUM="9df1c409022985ee1ddd922fbf059d73"
+DOWNLOAD="https://github.com/vcftools/vcftools/archive/1d27c24/vcftools-1d27c245276cc9b10c4b20e1fedc5e4adfcc0123.tar.gz"
+MD5SUM="5220a370d011962a6023a2e696d91e14"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="tabix"