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-rw-r--r--academic/RBio/RBio.SlackBuild76
-rw-r--r--academic/RBio/RBio.info10
-rw-r--r--academic/RBio/README7
-rw-r--r--academic/RBio/autotoolize.diff191
-rw-r--r--academic/RBio/slack-desc19
5 files changed, 303 insertions, 0 deletions
diff --git a/academic/RBio/RBio.SlackBuild b/academic/RBio/RBio.SlackBuild
new file mode 100644
index 0000000000..eb0baa0876
--- /dev/null
+++ b/academic/RBio/RBio.SlackBuild
@@ -0,0 +1,76 @@
+#!/bin/sh
+
+# Slackware build script for RBio
+# Written by Kyle Guinn <elyk03@gmail.com>
+
+PRGNAM=RBio
+VERSION=${VERSION:-2.0.0}
+BUILD=${BUILD:-1}
+TAG=${TAG:-_SBo}
+
+if [ -z "$ARCH" ]; then
+ case "$(uname -m)" in
+ i?86) ARCH=i486 ;;
+ arm*) ARCH=arm ;;
+ *) ARCH=$(uname -m) ;;
+ esac
+fi
+
+CWD=$(pwd)
+TMP=${TMP:-/tmp/SBo}
+PKG=$TMP/package-$PRGNAM
+OUTPUT=${OUTPUT:-/tmp}
+
+DOCS="README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt"
+
+if [ "$ARCH" = "i486" ]; then
+ SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+ LIBDIRSUFFIX=""
+elif [ "$ARCH" = "i686" ]; then
+ SLKCFLAGS="-O2 -march=i686 -mtune=i686"
+ LIBDIRSUFFIX=""
+elif [ "$ARCH" = "x86_64" ]; then
+ SLKCFLAGS="-O2 -fPIC"
+ LIBDIRSUFFIX="64"
+else
+ SLKCFLAGS="-O2"
+ LIBDIRSUFFIX=""
+fi
+
+set -e
+
+rm -rf $PKG
+mkdir -p $TMP $PKG $OUTPUT
+cd $TMP
+rm -rf $PRGNAM
+tar xvf $CWD/$PRGNAM.tar.gz
+cd $PRGNAM
+chown -R root:root .
+chmod -R u+w,go+r-w,a-st .
+
+patch -p1 < $CWD/autotoolize.diff
+autoreconf -vif
+
+CFLAGS="$SLKCFLAGS" \
+CXXFLAGS="$SLKCFLAGS" \
+./configure \
+ --prefix=/usr \
+ --libdir=/usr/lib${LIBDIRSUFFIX} \
+ --sysconfdir=/etc \
+ --localstatedir=/var \
+ --mandir=/usr/man \
+ --docdir=/usr/doc/$PRGNAM-$VERSION \
+ --build=$ARCH-slackware-linux
+
+make
+make install-strip DESTDIR=$PKG
+
+mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
+cp -a $DOCS $PKG/usr/doc/$PRGNAM-$VERSION
+cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
+
+mkdir -p $PKG/install
+cat $CWD/slack-desc > $PKG/install/slack-desc
+
+cd $PKG
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
diff --git a/academic/RBio/RBio.info b/academic/RBio/RBio.info
new file mode 100644
index 0000000000..da7767316d
--- /dev/null
+++ b/academic/RBio/RBio.info
@@ -0,0 +1,10 @@
+PRGNAM="RBio"
+VERSION="2.0.0"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/RBio/"
+DOWNLOAD="http://www.cise.ufl.edu/research/sparse/RBio/current/RBio.tar.gz"
+MD5SUM="c27563fce30d45b5a0ee33ccde035005"
+DOWNLOAD_x86_64=""
+MD5SUM_x86_64=""
+MAINTAINER="Kyle Guinn"
+EMAIL="elyk03@gmail.com"
+APPROVED="dsomero"
diff --git a/academic/RBio/README b/academic/RBio/README
new file mode 100644
index 0000000000..5b5398cd52
--- /dev/null
+++ b/academic/RBio/README
@@ -0,0 +1,7 @@
+RBio - MATLAB toolbox for reading/writing sparse matrices in the
+Rutherford/Boeing format, and for reading/writing problems in the UF
+Sparse Matrix Collection from/to a set of files in a directory.
+
+This package is part of SuiteSparse.
+
+Requires UFconfig.
diff --git a/academic/RBio/autotoolize.diff b/academic/RBio/autotoolize.diff
new file mode 100644
index 0000000000..709474efa6
--- /dev/null
+++ b/academic/RBio/autotoolize.diff
@@ -0,0 +1,191 @@
+diff --git a/Demo/Makefile.am b/Demo/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Demo/Makefile.am
+@@ -0,0 +1,16 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include
++LDADD = $(top_builddir)/Source/librbio.la -lufconfig
++
++check_PROGRAMS = \
++ RBdemo
++
++RBdemo_SOURCES = RBdemo.c
++
++RB = \
++ ../RBio/private/west0479.rua
++
++check-local: $(check_PROGRAMS) $(RB)
++ ./RBdemo < ../RBio/private/west0479.rua
++
++clean-local:
++ -$(RM) temp.rb
+diff --git a/Makefile.am b/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Makefile.am
+@@ -0,0 +1,3 @@
++SUBDIRS = Source RBio/private Demo Tcov
++EXTRA_DIST = README.txt Doc/ChangeLog Doc/License.txt Doc/gpl.txt
++include_HEADERS = Include/RBio.h
+diff --git a/RBio/private/Makefile.am b/RBio/private/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/RBio/private/Makefile.am
+@@ -0,0 +1,7 @@
++dist_noinst_DATA = \
++ bcsstk01.rb \
++ farm.rb \
++ lap_25.pse \
++ lap_25.rb \
++ west0479.rb \
++ west0479.rua
+diff --git a/Source/Makefile.am b/Source/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Source/Makefile.am
+@@ -0,0 +1,16 @@
++AM_CPPFLAGS = -I$(top_srcdir)/Include
++
++RBIOSRC = \
++ RBio.c
++
++lib_LTLIBRARIES = librbio.la
++noinst_LTLIBRARIES = librbioi.la librbiol.la
++
++librbioi_la_SOURCES = $(RBIOSRC)
++librbioi_la_CPPFLAGS = $(AM_CPPFLAGS) -DINT
++
++librbiol_la_SOURCES = $(RBIOSRC)
++
++librbio_la_SOURCES =
++librbio_la_LIBADD = librbioi.la librbiol.la
++librbio_la_LDFLAGS = -no-undefined -version-info 2:0:0
+diff --git a/Tcov/Makefile.am b/Tcov/Makefile.am
+new file mode 100644
+--- /dev/null
++++ b/Tcov/Makefile.am
+@@ -0,0 +1,94 @@
++AM_CC = gcc
++AM_CFLAGS = -O0 -g --coverage
++AM_CPPFLAGS = -I$(top_srcdir)/Include
++LDADD = -lufconfig
++
++dist_noinst_DATA = \
++ matrices/Tina_DisCog.tar.gz \
++ matrices/dwg961a.tar.gz \
++ matrices/m4.rb \
++ matrices/m4b.rb \
++ matrices/mhd1280a.tar.gz \
++ matrices/mhd1280b.tar.gz \
++ matrices/plskz362.tar.gz \
++ matrices/qc324.tar.gz \
++ matrices/s4.rb \
++ matrices/west0067.tar.gz \
++ mangled/1.rb \
++ mangled/2.rb \
++ mangled/3.rb \
++ mangled/4.rb \
++ mangled/5.rb \
++ mangled/6.rb \
++ mangled/7.rb \
++ mangled/8.rb \
++ mangled/9.rb \
++ mangled/10.rb \
++ mangled/11.rb \
++ mangled/12.rb \
++ mangled/13.rb \
++ mangled/14.rb \
++ mangled/15.rb
++
++check_PROGRAMS = \
++ RBdemo \
++ RBtest
++
++RBio.c: ../Source/RBio.c
++ $(LN_S) -f $< $@
++
++RBdemo.c: ../Demo/RBdemo.c
++ $(LN_S) -f $< $@
++
++RBdemo_SOURCES = RBdemo.c RBio.c
++RBtest_SOURCES = RBtest.c RBio.c
++
++TAR = tar -O -xvvzf
++
++RB = \
++ ../RBio/private/bcsstk01.rb \
++ ../RBio/private/farm.rb \
++ ../RBio/private/lap_25.pse \
++ ../RBio/private/lap_25.rb \
++ ../RBio/private/west0479.rb \
++ ../RBio/private/west0479.rua \
++ $(dist_noinst_DATA)
++
++check-local: $(check_PROGRAMS) $(RB)
++ -./RBdemo ../RBio/private/bcsstk01.rb
++ -./RBdemo ../RBio/private/farm.rb
++ -./RBdemo ../RBio/private/lap_25.pse
++ -./RBdemo ../RBio/private/lap_25.rb
++ -./RBdemo ../RBio/private/west0479.rb
++ -./RBdemo ../RBio/private/west0479.rua
++ -$(TAR) matrices/dwg961a.tar.gz dwg961a/dwg961a.rb | ./RBdemo
++ -$(TAR) matrices/mhd1280a.tar.gz mhd1280a/mhd1280a.rb | ./RBdemo
++ -$(TAR) matrices/mhd1280b.tar.gz mhd1280b/mhd1280b.rb | ./RBdemo
++ -$(TAR) matrices/qc324.tar.gz qc324/qc324.rb | ./RBdemo
++ -$(TAR) matrices/plskz362.tar.gz plskz362/plskz362.rb | ./RBdemo
++ -$(TAR) matrices/west0067.tar.gz west0067/west0067.rb | ./RBdemo
++ -$(TAR) matrices/Tina_DisCog.tar.gz Tina_DisCog/Tina_DisCog.rb | ./RBdemo
++ -./RBdemo matrices/m4.rb
++ -./RBdemo matrices/s4.rb
++ -./RBdemo matrices/m4b.rb
++ -./RBdemo mangled/1.rb
++ -./RBdemo mangled/2.rb
++ -./RBdemo mangled/3.rb
++ -./RBdemo mangled/4.rb
++ -./RBdemo mangled/5.rb
++ -./RBdemo mangled/6.rb
++ -./RBdemo mangled/7.rb
++ -./RBdemo mangled/8.rb
++ -./RBdemo mangled/9.rb
++ -./RBdemo mangled/10.rb
++ -./RBdemo mangled/11.rb
++ -./RBdemo mangled/12.rb
++ -./RBdemo mangled/13.rb
++ -./RBdemo mangled/14.rb
++ -./RBdemo mangled/15.rb
++ -./RBtest
++ -gcov *.c > gcov.out
++ -grep "#####" RBio.c.gcov | wc -l
++
++clean-local:
++ -$(RM) gcov.out *.gcov *.gcda *.gcno temp*.rb
+diff --git a/configure.ac b/configure.ac
+new file mode 100644
+--- /dev/null
++++ b/configure.ac
+@@ -0,0 +1,25 @@
++AC_PREREQ([2.65])
++AC_INIT([RBio], [2.0.0], [davis@cise.ufl.edu])
++AC_CONFIG_SRCDIR([Source/RBio.c])
++AC_CONFIG_HEADER([config.h])
++AM_INIT_AUTOMAKE([foreign])
++LT_INIT
++
++AC_PROG_INSTALL
++AC_PROG_CC
++
++LIBS_SAVED=$LIBS
++
++AC_CHECK_LIB([ufconfig], [UFmalloc])
++
++AC_CHECK_HEADERS([stddef.h stdlib.h string.h])
++
++LIBS=$LIBS_SAVED
++
++AC_CONFIG_FILES([
++ Makefile
++ Demo/Makefile
++ RBio/private/Makefile
++ Source/Makefile
++ Tcov/Makefile])
++AC_OUTPUT
diff --git a/academic/RBio/slack-desc b/academic/RBio/slack-desc
new file mode 100644
index 0000000000..6522449794
--- /dev/null
+++ b/academic/RBio/slack-desc
@@ -0,0 +1,19 @@
+# HOW TO EDIT THIS FILE:
+# The "handy ruler" below makes it easier to edit a package description. Line
+# up the first '|' above the ':' following the base package name, and the '|'
+# on the right side marks the last column you can put a character in. You must
+# make exactly 11 lines for the formatting to be correct. It's also
+# customary to leave one space after the ':'.
+
+ |-----handy-ruler------------------------------------------------------|
+RBio: RBio (sparse matrix I/O routines)
+RBio:
+RBio: RBio - MATLAB toolbox for reading/writing sparse matrices in the
+RBio: Rutherford/Boeing format, and for reading/writing problems in the
+RBio: UF Sparse Matrix Collection from/to a set of files in a directory.
+RBio:
+RBio:
+RBio:
+RBio:
+RBio:
+RBio: