diff options
2292 files changed, 25161 insertions, 31987 deletions
diff --git a/academic/Gridcoin-Research/Gridcoin-Research.SlackBuild b/academic/Gridcoin-Research/Gridcoin-Research.SlackBuild index 527985f8c5..b311b81328 100644 --- a/academic/Gridcoin-Research/Gridcoin-Research.SlackBuild +++ b/academic/Gridcoin-Research/Gridcoin-Research.SlackBuild @@ -25,7 +25,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=Gridcoin-Research -VERSION=${VERSION:-5.3.1.0} +VERSION=${VERSION:-5.3.2.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} diff --git a/academic/Gridcoin-Research/Gridcoin-Research.info b/academic/Gridcoin-Research/Gridcoin-Research.info index dd8477dc76..973eb55d22 100644 --- a/academic/Gridcoin-Research/Gridcoin-Research.info +++ b/academic/Gridcoin-Research/Gridcoin-Research.info @@ -1,8 +1,8 @@ PRGNAM="Gridcoin-Research" -VERSION="5.3.1.0" +VERSION="5.3.2.0" HOMEPAGE="https://gridcoin.us/" -DOWNLOAD="https://github.com/gridcoin-community/Gridcoin-Research/archive/5.3.1.0/Gridcoin-Research-5.3.1.0.tar.gz" -MD5SUM="773b104454e9c35f0594e28d88e04ed7" +DOWNLOAD="https://github.com/gridcoin-community/Gridcoin-Research/archive/5.3.2.0/Gridcoin-Research-5.3.2.0.tar.gz" +MD5SUM="b9a445955960d9af7a54bd26df6904e1" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" diff --git a/academic/Gridcoin-Research/README b/academic/Gridcoin-Research/README index 308e5898d0..c5d43b5115 100644 --- a/academic/Gridcoin-Research/README +++ b/academic/Gridcoin-Research/README @@ -13,4 +13,11 @@ You will need to edit the configuration file gridcoinresearch.conf in /etc/Gridcoin-Research/ and place it in your home directory ~/.GridcoinResearch/ to provide the location of your boinc data and any other configurations that you require. For details, see -https://wiki.gridcoin.us/Gridcoinresearch_config_file +https://wiki.gridcoin.us/Gridcoinresearch_config_file and in +/usr/share/Gridcoin-Research-$VERSION/doc/ + +Note: New gridcoinsettings.json file + +This file contains settings changed by the node while running and +settings stored in this file override the read-only settings in the +gridcoinresearch.conf file (see changelog and documentation). diff --git a/academic/ITK/ITK.SlackBuild b/academic/ITK/ITK.SlackBuild index afd0f0cc99..bc13af67ce 100644 --- a/academic/ITK/ITK.SlackBuild +++ b/academic/ITK/ITK.SlackBuild @@ -85,7 +85,7 @@ find -L . \ patch -p1 <<'endpatch' --- InsightToolkit-4.13.2/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h.cp +++ InsightToolkit-4.13.2/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h -@@ -96,6 +96,28 @@ +@@ -96,6 +96,39 @@ # define VCL_GCC_81 # else # define VCL_GCC_80 @@ -111,6 +111,17 @@ patch -p1 <<'endpatch' +# define VCL_GCC_101 +# else +# define VCL_GCC_100 ++# endif ++# elif (__GNUC__==11) ++# define VCL_GCC_11 ++# if (__GNUC_MINOR__ > 2 ) ++# define VCL_GCC_113 ++# elif (__GNUC_MINOR__ > 1 ) ++# define VCL_GCC_112 ++# elif (__GNUC_MINOR__ > 0 ) ++# define VCL_GCC_111 ++# else ++# define VCL_GCC_110 # endif # else # error "Dunno about this gcc" diff --git a/academic/STAR/STAR.SlackBuild b/academic/STAR/STAR.SlackBuild index 560a3b130e..f5abdc97dd 100644 --- a/academic/STAR/STAR.SlackBuild +++ b/academic/STAR/STAR.SlackBuild @@ -25,7 +25,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=STAR -VERSION=${VERSION:-2.7.8a} +VERSION=${VERSION:-2.7.9a} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -90,9 +90,9 @@ cd source mkdir -p $PKG/usr/bin install -Dm755 $PRGNAM "$PKG/usr/bin/${PRGNAM}" - make clean - make ${PRGNAM}long CXXFLAGSextra="$CXXFLAGS" - install -Dm755 ${PRGNAM}long "$PKG/usr/bin/${PRGNAM}long" + #make clean + #make ${PRGNAM}long CXXFLAGSextra="$CXXFLAGS" + #install -Dm755 ${PRGNAM}long "$PKG/usr/bin/${PRGNAM}long" cd .. diff --git a/academic/STAR/STAR.info b/academic/STAR/STAR.info index 68740e69a3..4c3a22024f 100644 --- a/academic/STAR/STAR.info +++ b/academic/STAR/STAR.info @@ -1,10 +1,10 @@ PRGNAM="STAR" -VERSION="2.7.8a" +VERSION="2.7.9a" HOMEPAGE="https://github.com/alexdobin/STAR" DOWNLOAD="UNSUPPORTED" MD5SUM="" -DOWNLOAD_x86_64="https://github.com/alexdobin/STAR/archive/2.7.8a/STAR-2.7.8a.tar.gz" -MD5SUM_x86_64="b6482dd380c5c07587166ee240573780" +DOWNLOAD_x86_64="https://github.com/alexdobin/STAR/archive/2.7.9a/STAR-2.7.9a.tar.gz" +MD5SUM_x86_64="432c55d7ee7223c9099206a697bd9c30" REQUIRES="" MAINTAINER="Rob van Nues" EMAIL="sborg63@disroot.org" diff --git a/academic/bcftools/bcftools.SlackBuild b/academic/bcftools/bcftools.SlackBuild index ccfd667c5d..72eb090bf4 100644 --- a/academic/bcftools/bcftools.SlackBuild +++ b/academic/bcftools/bcftools.SlackBuild @@ -1,6 +1,6 @@ #!/bin/bash -# Slackware build script for samtools +# Slackware build script for bcftools # Copyright 2017-2021 Rob van Nues # All rights reserved. # @@ -21,11 +21,10 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - cd $(dirname $0) ; CWD=$(pwd) PRGNAM=bcftools -VERSION=${VERSION:-1.12} +VERSION=${VERSION:-1.13} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -45,7 +44,6 @@ if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" exit 0 fi - TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} diff --git a/academic/bcftools/bcftools.info b/academic/bcftools/bcftools.info index ad211ee207..fd44d1a70c 100644 --- a/academic/bcftools/bcftools.info +++ b/academic/bcftools/bcftools.info @@ -1,8 +1,8 @@ PRGNAM="bcftools" -VERSION="1.12" +VERSION="1.13" HOMEPAGE="http://www.htslib.org" -DOWNLOAD="https://github.com/samtools/bcftools/releases/download/1.12/bcftools-1.12.tar.bz2" -MD5SUM="d3622cb3e52039055fd91ad65ea5131e" +DOWNLOAD="https://github.com/samtools/bcftools/releases/download/1.13/bcftools-1.13.tar.bz2" +MD5SUM="c540ca90d61b7bb395f52aafc959fd4a" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="htslib" diff --git a/academic/bowtie2/bowtie2.SlackBuild b/academic/bowtie2/bowtie2.SlackBuild index 585d914dd5..f659668de5 100644 --- a/academic/bowtie2/bowtie2.SlackBuild +++ b/academic/bowtie2/bowtie2.SlackBuild @@ -3,7 +3,7 @@ # Slackware build script for bowtie2 # Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com -# Copyright 2018-2020 Rob van Nues sborg63@disroot.org +# Copyright 2018-2021 Rob van Nues sborg63@disroot.org # # All rights reserved. # @@ -27,7 +27,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=bowtie2 -VERSION=${VERSION:-2.4.2} +VERSION=${VERSION:-2.4.4} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} diff --git a/academic/bowtie2/bowtie2.info b/academic/bowtie2/bowtie2.info index f712462315..1fd73195b3 100644 --- a/academic/bowtie2/bowtie2.info +++ b/academic/bowtie2/bowtie2.info @@ -1,8 +1,8 @@ PRGNAM="bowtie2" -VERSION="2.4.2" +VERSION="2.4.4" HOMEPAGE="https://github.com/BenLangmead/bowtie2/releases" -DOWNLOAD="https://github.com/BenLangmead/bowtie2/archive/v2.4.2/bowtie2-2.4.2.tar.gz" -MD5SUM="d5f8674aed8bdbf6b96bd07f3df528ee" +DOWNLOAD="https://github.com/BenLangmead/bowtie2/archive/v2.4.4/bowtie2-2.4.4.tar.gz" +MD5SUM="b9da62b01d904149ffc6f5caad7fd1b1" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="tbb" diff --git a/academic/cblas/cblas.SlackBuild b/academic/cblas/cblas.SlackBuild index a92711ab77..6bd73f6c80 100644 --- a/academic/cblas/cblas.SlackBuild +++ b/academic/cblas/cblas.SlackBuild @@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=cblas SRCNAM=lapack -VERSION=${VERSION:-3.9.1} +VERSION=${VERSION:-3.10.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} diff --git a/academic/cblas/cblas.info b/academic/cblas/cblas.info index 7821e1a648..08ecd567f0 100644 --- a/academic/cblas/cblas.info +++ b/academic/cblas/cblas.info @@ -1,8 +1,8 @@ PRGNAM="cblas" -VERSION="3.9.1" +VERSION="3.10.0" HOMEPAGE="https://www.netlib.org/blas/" -DOWNLOAD="https://github.com/Reference-LAPACK/lapack/archive/v3.9.1/lapack-3.9.1.tar.gz" -MD5SUM="47ab2d11652045145df37ddbe2a32d71" +DOWNLOAD="https://github.com/Reference-LAPACK/lapack/archive/v3.10.0/lapack-3.10.0.tar.gz" +MD5SUM="d70fc27a8bdebe00481c97c728184f09" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="blas" diff --git a/academic/cblas/patches/cmake-piecewise.diff b/academic/cblas/patches/cmake-piecewise.diff index 378acc8769..f8ee150b59 100644 --- a/academic/cblas/patches/cmake-piecewise.diff +++ b/academic/cblas/patches/cmake-piecewise.diff @@ -10,61 +10,29 @@ diff --git a/CBLAS/CMakeLists.txt b/CBLAS/CMakeLists.txt # Create a header file cblas.h for the routines called in my C programs include(FortranCInterface) ## Ensure that the fortran compiler and c compiler specified are compatible -@@ -45,54 +43,8 @@ - add_subdirectory(examples) - endif() - --if(NOT BLAS_FOUND) -- set(ALL_TARGETS ${ALL_TARGETS} ${BLASLIB}) --endif() -- --# Export cblas targets from the --# install tree, if any. --set(_cblas_config_install_guard_target "") --if(ALL_TARGETS) -- install(EXPORT ${CBLASLIB}-targets -- DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${CBLASLIB}-${LAPACK_VERSION} -- COMPONENT Development -- ) -- # Choose one of the cblas targets to use as a guard for -- # cblas-config.cmake to load targets from the install tree. -- list(GET ALL_TARGETS 0 _cblas_config_install_guard_target) --endif() -- --# Export cblas targets from the build tree, if any. --set(_cblas_config_build_guard_target "") --if(ALL_TARGETS) -- export(TARGETS ${ALL_TARGETS} FILE ${CBLASLIB}-targets.cmake) -- -- # Choose one of the cblas targets to use as a guard -- # for cblas-config.cmake to load targets from the build tree. -- list(GET ALL_TARGETS 0 _cblas_config_build_guard_target) --endif() +@@ -51,22 +49,3 @@ + DESTINATION ${PKG_CONFIG_DIR} + COMPONENT Development + ) - -configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cmake/cblas-config-version.cmake.in - ${LAPACK_BINARY_DIR}/${CBLASLIB}-config-version.cmake @ONLY) -configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cmake/cblas-config-build.cmake.in - ${LAPACK_BINARY_DIR}/${CBLASLIB}-config.cmake @ONLY) - -- - configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cblas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/${CBLASLIB}.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/${CBLASLIB}.pc - DESTINATION ${PKG_CONFIG_DIR} - ) -- -configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cmake/cblas-config-install.cmake.in - ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${CBLASLIB}-config.cmake @ONLY) -install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${CBLASLIB}-config.cmake - ${LAPACK_BINARY_DIR}/${CBLASLIB}-config-version.cmake - DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${CBLASLIB}-${LAPACK_VERSION} +- COMPONENT Development - ) - --#install(EXPORT ${CBLASLIB}-targets --# DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${CBLASLIB}-${LAPACK_VERSION} --# COMPONENT Development --# ) +-install(EXPORT ${CBLASLIB}-targets +- DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${CBLASLIB}-${LAPACK_VERSION} +- COMPONENT Development +- ) diff --git a/CBLAS/cmake/cblas-config-build.cmake.in b/CBLAS/cmake/cblas-config-build.cmake.in deleted file mode 100644 --- a/CBLAS/cmake/cblas-config-build.cmake.in @@ -184,7 +152,7 @@ deleted file mode 100644 diff --git a/CMakeLists.txt b/CMakeLists.txt --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -160,11 +160,8 @@ +@@ -157,11 +157,8 @@ # -------------------------------------------------- @@ -196,7 +164,7 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} COMPONENT Development LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR} COMPONENT RuntimeLibraries RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT RuntimeLibraries -@@ -204,21 +201,6 @@ +@@ -201,21 +198,6 @@ include(CheckLAPACKCompilerFlags) CheckLAPACKCompilerFlags() @@ -218,7 +186,7 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt # deprecated LAPACK and LAPACKE routines option(BUILD_DEPRECATED "Build deprecated routines" OFF) message(STATUS "Build deprecated routines: ${BUILD_DEPRECATED}") -@@ -242,8 +224,9 @@ +@@ -239,8 +221,9 @@ endif() # -------------------------------------------------- @@ -229,7 +197,7 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt # Check the usage of the user provided BLAS libraries if(BLAS_LIBRARIES) -@@ -254,113 +237,108 @@ +@@ -251,131 +234,105 @@ if(BLAS_FOUND) message(STATUS "--> BLAS supplied by user is WORKING, will use ${BLAS_LIBRARIES}.") else() @@ -383,17 +351,35 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt - set(LAPACKE ON) + set(BUILD_LAPACKE ON) endif() - if(BUILD_TESTING OR LAPACKE_WITH_TMG) #already included, avoid double inclusion - add_subdirectory(TESTING/MATGEN) - endif() +-# TMGLIB +-# Cache export target +-set(LAPACK_INSTALL_EXPORT_NAME_CACHE ${LAPACK_INSTALL_EXPORT_NAME}) +-if(BUILD_TESTING OR LAPACKE_WITH_TMG) +- if(LATESTLAPACK_FOUND AND LAPACKE_WITH_TMG) +- set(CMAKE_REQUIRED_LIBRARIES ${LAPACK_LIBRARIES}) +- # Check if dlatms (part of tmg) is found +- CHECK_FORTRAN_FUNCTION_EXISTS("dlatms" LAPACK_WITH_TMGLIB_FOUND) +- unset(CMAKE_REQUIRED_LIBRARIES) +- if(NOT LAPACK_WITH_TMGLIB_FOUND) +- # Build and install TMG as part of LAPACKE targets (as opposed to LAPACK +- # targets) +- set(LAPACK_INSTALL_EXPORT_NAME ${LAPACKELIB}-targets) +- endif() +- endif() +- add_subdirectory(TESTING/MATGEN) +-endif() +-# Reset export target +-set(LAPACK_INSTALL_EXPORT_NAME ${LAPACK_INSTALL_EXPORT_NAME_CACHE}) +-unset(LAPACK_INSTALL_EXPORT_NAME_CACHE) +- -if(LAPACKE) +if(BUILD_LAPACKE) + set(NEED_LAPACK TRUE) add_subdirectory(LAPACKE) endif() -@@ -414,111 +392,16 @@ +@@ -428,111 +385,16 @@ ExternalProject_Add_StepDependencies(lapackpp build blaspp ${BLAS_LIBRARIES} ${LAPACK_LIBRARIES}) endif() @@ -437,10 +423,6 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt - set(ALL_TARGETS ${ALL_TARGETS} ${LAPACKLIB}) -endif() - --if(BUILD_TESTING OR LAPACKE_WITH_TMG) -- set(ALL_TARGETS ${ALL_TARGETS} ${TMGLIB}) --endif() -- -# Export lapack targets, not including lapacke, from the -# install tree, if any. -set(_lapack_config_install_guard_target "") @@ -463,6 +445,10 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt -# Include lapacke in targets exported from the build tree. -if(LAPACKE) - set(ALL_TARGETS ${ALL_TARGETS} ${LAPACKELIB}) +-endif() +- +-if(NOT LAPACK_WITH_TMGLIB_FOUND AND LAPACKE_WITH_TMG) +- set(ALL_TARGETS ${ALL_TARGETS} ${TMGLIB}) +# Neither user specified or optimized BLAS libraries can be used +if(NEED_BLAS AND NOT BLAS_FOUND) + message(FATAL_ERROR "--> No BLAS library found. Specify BLAS_LIBRARIES or enable USE_OPTIMIZED_BLAS or BUILD_BLAS.") @@ -595,7 +581,7 @@ deleted file mode 100644 -get_filename_component(_LAPACKE_PREFIX "${_LAPACKE_PREFIX}" PATH) - -# Load the LAPACK package with which we were built. --set(LAPACK_DIR "${_LAPACKE_PREFIX}/@CMAKE_INSTALL_LIBDIR@/cmake/@LAPACK@-@LAPACK_VERSION@") +-set(LAPACK_DIR "${_LAPACKE_PREFIX}/@CMAKE_INSTALL_LIBDIR@/cmake/@LAPACKLIB@-@LAPACK_VERSION@") -find_package(LAPACK NO_MODULE) - -# Load lapacke targets from the install tree. diff --git a/academic/ent/ent.SlackBuild b/academic/ent/ent.SlackBuild index 92d0037611..74608571e8 100644 --- a/academic/ent/ent.SlackBuild +++ b/academic/ent/ent.SlackBuild @@ -24,9 +24,6 @@ if [ -z "$ARCH" ]; then esac fi -# If the variable PRINT_PACKAGE_NAME is set, then this script will report what -# the name of the created package would be, and then exit. This information -# could be useful to other scripts. if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" exit 0 @@ -60,11 +57,8 @@ mkdir -p $PRGNAM cd $PRGNAM unzip $CWD/$ARCHIVE chown -R root:root . -find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \ - -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ - -exec chmod 644 {} \; +find -L . -perm /111 -a \! -perm 755 -a -exec chmod 755 {} \+ -o \ + \! -perm /111 -a \! -perm 644 -a -exec chmod 644 {} \+ make CC=gcc CFLAGS="$SLKCFLAGS" strip $PRGNAM diff --git a/academic/equalx/equalx.SlackBuild b/academic/equalx/equalx.SlackBuild index 712c8dc7cf..e827277920 100644 --- a/academic/equalx/equalx.SlackBuild +++ b/academic/equalx/equalx.SlackBuild @@ -25,6 +25,8 @@ # Now maintained by B. Watson <yalhcru@gmail.com> +# 20210802 bkw: BUILD=3, update for qt5 on -current. + # 20200101 bkw: # - take over maintenance # - BUILD=2 @@ -38,7 +40,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=equalx VERSION=${VERSION:-0.7.1} -BUILD=${BUILD:-2} +BUILD=${BUILD:-3} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -50,9 +52,6 @@ if [ -z "$ARCH" ]; then esac fi -# If the variable PRINT_PACKAGE_NAME is set, then this script will report what -# the name of the created package would be, and then exit. This information -# could be useful to other scripts. if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" exit 0 @@ -88,13 +87,18 @@ chown -R root:root . find -L . -perm /111 -a \! -perm 755 -a -exec chmod 755 {} \+ -o \ \! -perm /111 -a \! -perm 644 -a -exec chmod 644 {} \+ +# Note: patches are gzipped because they have a mix of \n and \r\n +# line endings. git can have issues with that. + # Make sure the application can find the external binaries it runs, # without defaulting to silly things like .exe files. The patch actually # makes it look for pdflatex in both places it might be found (/usr/bin # for texlive, /usr/share/texmf/bin for tetex). zcat $CWD/externpaths.diff.gz | patch -p1 -CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" qmake +zcat $CWD/qt5fix.diff.gz | patch -p1 + +CFLAGS="$SLKCFLAGS" CXXFLAGS="$SLKCFLAGS" qmake-qt5 sed -i "s,-O2,$SLKCFLAGS," Makefile make diff --git a/academic/equalx/qt5fix.diff.gz b/academic/equalx/qt5fix.diff.gz Binary files differnew file mode 100644 index 0000000000..cae6023bfd --- /dev/null +++ b/academic/equalx/qt5fix.diff.gz diff --git a/academic/flexbar/flexbar.SlackBuild b/academic/flexbar/flexbar.SlackBuild index 6f3c535ec2..69ec0db8d0 100644 --- a/academic/flexbar/flexbar.SlackBuild +++ b/academic/flexbar/flexbar.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for flexbar -# Copyright 2017-18 Rob van Nues +# Copyright 2017-2021 Rob van Nues # All rights reserved. # # Redistribution and use of this script, with or without modification, is diff --git a/academic/gspiceui/gspiceui.info b/academic/gspiceui/gspiceui.info index a46c540959..d2d260e790 100644 --- a/academic/gspiceui/gspiceui.info +++ b/academic/gspiceui/gspiceui.info @@ -5,6 +5,6 @@ DOWNLOAD="https://sourceforge.net/projects/gspiceui/files/gSpiceUI/gspiceui-v1.2 MD5SUM="a385028952ada5aa69acdb7298332c8c" DOWNLOAD_x86_64="" MD5SUM_x86_64="" -REQUIRES="pangox-compat wxPython3" +REQUIRES="pangox-compat wxGTK3" MAINTAINER="R. S. Ananda Murthy" EMAIL="rsamurti@gmail.com" diff --git a/academic/ladr/ladr.SlackBuild b/academic/ladr/ladr.SlackBuild index f7da65f1ef..ef780319ec 100644 --- a/academic/ladr/ladr.SlackBuild +++ b/academic/ladr/ladr.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ladr -# Copyright 2007-2010 Heinz Wiesinger, Amsterdam, The Netherlands +# Copyright 2007-2021 Heinz Wiesinger, Amsterdam, The Netherlands # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -11,22 +11,22 @@ # 1. Redistributions of this script must retain the above copyright # notice, this list of conditions and the following disclaimer. # -# THIS SOFTWARE IS PROVIDED BY THE AUTHOR ''AS IS'' AND ANY EXPRESS OR IMPLIED -# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF -# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO -# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, -# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, -# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; -# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, -# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR -# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF -# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +# THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR IMPLIED +# WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO +# EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +# SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, +# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; +# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, +# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR +# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF +# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. cd $(dirname $0) ; CWD=$(pwd) PRGNAM=ladr VERSION=${VERSION:-2009_11A} -BUILD=${BUILD:-1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -90,7 +90,6 @@ XFLAGS="$SLKCFLAGS" make all MAKEFLAGS="-j1" mkdir -p $PKG/usr/{bin,lib$LIBDIRSUFFIX} install -m 0755 ./bin/* $PKG/usr/bin/ -install -m 0755 ./ladr/libladr.la $PKG/usr/lib$LIBDIRSUFFIX/ install -m 0755 ./ladr/.libs/libladr.so.4.0.0 $PKG/usr/lib$LIBDIRSUFFIX/ ln -s /usr/lib$LIBDIRSUFFIX/libladr.so.4.0.0 $PKG/usr/lib$LIBDIRSUFFIX/libladr.so.4 ln -s /usr/lib$LIBDIRSUFFIX/libladr.so.4.0.0 $PKG/usr/lib$LIBDIRSUFFIX/libladr.so diff --git a/academic/lapacke/lapacke.SlackBuild b/academic/lapacke/lapacke.SlackBuild index a79404abf2..6c8b77bc67 100644 --- a/academic/lapacke/lapacke.SlackBuild +++ b/academic/lapacke/lapacke.SlackBuild @@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=lapacke SRCNAM=lapack -VERSION=${VERSION:-3.9.1} +VERSION=${VERSION:-3.10.0} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} diff --git a/academic/lapacke/lapacke.info b/academic/lapacke/lapacke.info index aa77adac19..414042cc96 100644 --- a/academic/lapacke/lapacke.info +++ b/academic/lapacke/lapacke.info @@ -1,8 +1,8 @@ PRGNAM="lapacke" -VERSION="3.9.1" +VERSION="3.10.0" HOMEPAGE="https://www.netlib.org/lapack/lapacke.html" -DOWNLOAD="https://github.com/Reference-LAPACK/lapack/archive/v3.9.1/lapack-3.9.1.tar.gz" -MD5SUM="47ab2d11652045145df37ddbe2a32d71" +DOWNLOAD="https://github.com/Reference-LAPACK/lapack/archive/v3.10.0/lapack-3.10.0.tar.gz" +MD5SUM="d70fc27a8bdebe00481c97c728184f09" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="lapack" diff --git a/academic/lapacke/patches/cmake-piecewise.diff b/academic/lapacke/patches/cmake-piecewise.diff index 378acc8769..f8ee150b59 100644 --- a/academic/lapacke/patches/cmake-piecewise.diff +++ b/academic/lapacke/patches/cmake-piecewise.diff @@ -10,61 +10,29 @@ diff --git a/CBLAS/CMakeLists.txt b/CBLAS/CMakeLists.txt # Create a header file cblas.h for the routines called in my C programs include(FortranCInterface) ## Ensure that the fortran compiler and c compiler specified are compatible -@@ -45,54 +43,8 @@ - add_subdirectory(examples) - endif() - --if(NOT BLAS_FOUND) -- set(ALL_TARGETS ${ALL_TARGETS} ${BLASLIB}) --endif() -- --# Export cblas targets from the --# install tree, if any. --set(_cblas_config_install_guard_target "") --if(ALL_TARGETS) -- install(EXPORT ${CBLASLIB}-targets -- DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${CBLASLIB}-${LAPACK_VERSION} -- COMPONENT Development -- ) -- # Choose one of the cblas targets to use as a guard for -- # cblas-config.cmake to load targets from the install tree. -- list(GET ALL_TARGETS 0 _cblas_config_install_guard_target) --endif() -- --# Export cblas targets from the build tree, if any. --set(_cblas_config_build_guard_target "") --if(ALL_TARGETS) -- export(TARGETS ${ALL_TARGETS} FILE ${CBLASLIB}-targets.cmake) -- -- # Choose one of the cblas targets to use as a guard -- # for cblas-config.cmake to load targets from the build tree. -- list(GET ALL_TARGETS 0 _cblas_config_build_guard_target) --endif() +@@ -51,22 +49,3 @@ + DESTINATION ${PKG_CONFIG_DIR} + COMPONENT Development + ) - -configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cmake/cblas-config-version.cmake.in - ${LAPACK_BINARY_DIR}/${CBLASLIB}-config-version.cmake @ONLY) -configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cmake/cblas-config-build.cmake.in - ${LAPACK_BINARY_DIR}/${CBLASLIB}-config.cmake @ONLY) - -- - configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cblas.pc.in ${CMAKE_CURRENT_BINARY_DIR}/${CBLASLIB}.pc @ONLY) - install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/${CBLASLIB}.pc - DESTINATION ${PKG_CONFIG_DIR} - ) -- -configure_file(${CMAKE_CURRENT_SOURCE_DIR}/cmake/cblas-config-install.cmake.in - ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${CBLASLIB}-config.cmake @ONLY) -install(FILES - ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/${CBLASLIB}-config.cmake - ${LAPACK_BINARY_DIR}/${CBLASLIB}-config-version.cmake - DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${CBLASLIB}-${LAPACK_VERSION} +- COMPONENT Development - ) - --#install(EXPORT ${CBLASLIB}-targets --# DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${CBLASLIB}-${LAPACK_VERSION} --# COMPONENT Development --# ) +-install(EXPORT ${CBLASLIB}-targets +- DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${CBLASLIB}-${LAPACK_VERSION} +- COMPONENT Development +- ) diff --git a/CBLAS/cmake/cblas-config-build.cmake.in b/CBLAS/cmake/cblas-config-build.cmake.in deleted file mode 100644 --- a/CBLAS/cmake/cblas-config-build.cmake.in @@ -184,7 +152,7 @@ deleted file mode 100644 diff --git a/CMakeLists.txt b/CMakeLists.txt --- a/CMakeLists.txt +++ b/CMakeLists.txt -@@ -160,11 +160,8 @@ +@@ -157,11 +157,8 @@ # -------------------------------------------------- @@ -196,7 +164,7 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} COMPONENT Development LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR} COMPONENT RuntimeLibraries RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT RuntimeLibraries -@@ -204,21 +201,6 @@ +@@ -201,21 +198,6 @@ include(CheckLAPACKCompilerFlags) CheckLAPACKCompilerFlags() @@ -218,7 +186,7 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt # deprecated LAPACK and LAPACKE routines option(BUILD_DEPRECATED "Build deprecated routines" OFF) message(STATUS "Build deprecated routines: ${BUILD_DEPRECATED}") -@@ -242,8 +224,9 @@ +@@ -239,8 +221,9 @@ endif() # -------------------------------------------------- @@ -229,7 +197,7 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt # Check the usage of the user provided BLAS libraries if(BLAS_LIBRARIES) -@@ -254,113 +237,108 @@ +@@ -251,131 +234,105 @@ if(BLAS_FOUND) message(STATUS "--> BLAS supplied by user is WORKING, will use ${BLAS_LIBRARIES}.") else() @@ -383,17 +351,35 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt - set(LAPACKE ON) + set(BUILD_LAPACKE ON) endif() - if(BUILD_TESTING OR LAPACKE_WITH_TMG) #already included, avoid double inclusion - add_subdirectory(TESTING/MATGEN) - endif() +-# TMGLIB +-# Cache export target +-set(LAPACK_INSTALL_EXPORT_NAME_CACHE ${LAPACK_INSTALL_EXPORT_NAME}) +-if(BUILD_TESTING OR LAPACKE_WITH_TMG) +- if(LATESTLAPACK_FOUND AND LAPACKE_WITH_TMG) +- set(CMAKE_REQUIRED_LIBRARIES ${LAPACK_LIBRARIES}) +- # Check if dlatms (part of tmg) is found +- CHECK_FORTRAN_FUNCTION_EXISTS("dlatms" LAPACK_WITH_TMGLIB_FOUND) +- unset(CMAKE_REQUIRED_LIBRARIES) +- if(NOT LAPACK_WITH_TMGLIB_FOUND) +- # Build and install TMG as part of LAPACKE targets (as opposed to LAPACK +- # targets) +- set(LAPACK_INSTALL_EXPORT_NAME ${LAPACKELIB}-targets) +- endif() +- endif() +- add_subdirectory(TESTING/MATGEN) +-endif() +-# Reset export target +-set(LAPACK_INSTALL_EXPORT_NAME ${LAPACK_INSTALL_EXPORT_NAME_CACHE}) +-unset(LAPACK_INSTALL_EXPORT_NAME_CACHE) +- -if(LAPACKE) +if(BUILD_LAPACKE) + set(NEED_LAPACK TRUE) add_subdirectory(LAPACKE) endif() -@@ -414,111 +392,16 @@ +@@ -428,111 +385,16 @@ ExternalProject_Add_StepDependencies(lapackpp build blaspp ${BLAS_LIBRARIES} ${LAPACK_LIBRARIES}) endif() @@ -437,10 +423,6 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt - set(ALL_TARGETS ${ALL_TARGETS} ${LAPACKLIB}) -endif() - --if(BUILD_TESTING OR LAPACKE_WITH_TMG) -- set(ALL_TARGETS ${ALL_TARGETS} ${TMGLIB}) --endif() -- -# Export lapack targets, not including lapacke, from the -# install tree, if any. -set(_lapack_config_install_guard_target "") @@ -463,6 +445,10 @@ diff --git a/CMakeLists.txt b/CMakeLists.txt -# Include lapacke in targets exported from the build tree. -if(LAPACKE) - set(ALL_TARGETS ${ALL_TARGETS} ${LAPACKELIB}) +-endif() +- +-if(NOT LAPACK_WITH_TMGLIB_FOUND AND LAPACKE_WITH_TMG) +- set(ALL_TARGETS ${ALL_TARGETS} ${TMGLIB}) +# Neither user specified or optimized BLAS libraries can be used +if(NEED_BLAS AND NOT BLAS_FOUND) + message(FATAL_ERROR "--> No BLAS library found. Specify BLAS_LIBRARIES or enable USE_OPTIMIZED_BLAS or BUILD_BLAS.") @@ -595,7 +581,7 @@ deleted file mode 100644 -get_filename_component(_LAPACKE_PREFIX "${_LAPACKE_PREFIX}" PATH) - -# Load the LAPACK package with which we were built. --set(LAPACK_DIR "${_LAPACKE_PREFIX}/@CMAKE_INSTALL_LIBDIR@/cmake/@LAPACK@-@LAPACK_VERSION@") +-set(LAPACK_DIR "${_LAPACKE_PREFIX}/@CMAKE_INSTALL_LIBDIR@/cmake/@LAPACKLIB@-@LAPACK_VERSION@") -find_package(LAPACK NO_MODULE) - -# Load lapacke targets from the install tree. diff --git a/academic/locarna/locarna.SlackBuild b/academic/locarna/locarna.SlackBuild index 650dcafa56..1834ccf8f8 100644 --- a/academic/locarna/locarna.SlackBuild +++ b/academic/locarna/locarna.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for locarna -# Copyright 2019 Rob van Nues <sborg63@disroot.org> +# Copyright 2019-2021 Rob van Nues <sborg63@disroot.org> # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -22,7 +22,6 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - cd $(dirname $0) ; CWD=$(pwd) PRGNAM=locarna diff --git a/academic/nco/nco.SlackBuild b/academic/nco/nco.SlackBuild index bc92b458c5..72da777f42 100644 --- a/academic/nco/nco.SlackBuild +++ b/academic/nco/nco.SlackBuild @@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=nco -VERSION=${VERSION:-5.0.1} +VERSION=${VERSION:-5.0.3} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -106,8 +106,8 @@ rm -f $PKG/usr/info/dir gzip -9 $PKG/usr/info/*.info* mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a \ - AUTHORS CITATION COPYING COPYRIGHT INSTALL LICENSE README.md \ +cp -aL \ + AUTHORS CITATION COPYING COPYRIGHT ChangeLog INSTALL LICENSE README.md \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild diff --git a/academic/nco/nco.info b/academic/nco/nco.info index ec293124ed..f724e3b258 100644 --- a/academic/nco/nco.info +++ b/academic/nco/nco.info @@ -1,8 +1,8 @@ PRGNAM="nco" |