diff options
| -rw-r--r-- | academic/snpEff/README | 4 | ||||
| -rw-r--r-- | academic/snpEff/slack-desc | 2 | ||||
| -rw-r--r-- | academic/snpEff/snpEff.SlackBuild | 6 | ||||
| -rw-r--r-- | academic/snpEff/snpEff.info | 6 |
4 files changed, 9 insertions, 9 deletions
diff --git a/academic/snpEff/README b/academic/snpEff/README index a32c83dfba..979686a271 100644 --- a/academic/snpEff/README +++ b/academic/snpEff/README @@ -14,11 +14,11 @@ acid changes). This also installs SnpSift, a toolbox that allows you to filter and manipulate annotated files. Once your genomic variants have been -annotated, you need to filter them out in order to find the +annotated, you need to filter them out in order to find the "interesting / relevant variants". Given the large data files, this is not a trivial task (e.g. you cannot load all the variants into XLS spreadsheet). SnpSift helps to perform this VCF file manipulation and -filtering required at this stage in data processing pipelines. +filtering required at this stage in data processing pipelines. If you are using SnpEff or SnpSift, please cite: A program for annotating and predicting the effects of single diff --git a/academic/snpEff/slack-desc b/academic/snpEff/slack-desc index c87118b9f6..d0f6f3c84a 100644 --- a/academic/snpEff/slack-desc +++ b/academic/snpEff/slack-desc @@ -13,7 +13,7 @@ snpEff: annotates and predicts the effects of variants on genes (such snpEff: as amino acid changes). snpEff: snpEff: Home: http://snpeff.sourceforge.net/ -snpEff: References: /usr/doc/snpEff-4.2/References +snpEff: References: /usr/doc/snpEff-4.3k/References snpEff: snpEff: snpEff: diff --git a/academic/snpEff/snpEff.SlackBuild b/academic/snpEff/snpEff.SlackBuild index ad9dea74db..db1edd5ede 100644 --- a/academic/snpEff/snpEff.SlackBuild +++ b/academic/snpEff/snpEff.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for snpEff -# Copyright 2015-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2015-2017 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,8 +23,8 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=snpEff -VERSION=${VERSION:-4.2} -SRCVER=${SRCVER:-v4_2} +VERSION=${VERSION:-4.3k} +SRCVER=${SRCVER:-v4_3k} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} diff --git a/academic/snpEff/snpEff.info b/academic/snpEff/snpEff.info index 22ee84cb2d..2ab90b0237 100644 --- a/academic/snpEff/snpEff.info +++ b/academic/snpEff/snpEff.info @@ -1,8 +1,8 @@ PRGNAM="snpEff" -VERSION="4.2" +VERSION="4.3k" HOMEPAGE="http://snpeff.sourceforge.net/" -DOWNLOAD="http://sourceforge.net/projects/snpeff/files/snpEff_v4_2_core.zip" -MD5SUM="25ae5b062d57072de6cfb8677ca3625a" +DOWNLOAD="https://sourceforge.net/projects/snpeff/files/snpEff_v4_3k_core.zip" +MD5SUM="2533b329c734a678780cf045ba6b4a48" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="jdk" |