diff options
Diffstat (limited to 'academic/bowtie/bowtie.SlackBuild')
-rw-r--r-- | academic/bowtie/bowtie.SlackBuild | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/academic/bowtie/bowtie.SlackBuild b/academic/bowtie/bowtie.SlackBuild index d5b59d2871..ad3c81770e 100644 --- a/academic/bowtie/bowtie.SlackBuild +++ b/academic/bowtie/bowtie.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for bowtie -# Copyright 2013-2021 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2022 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -25,8 +25,8 @@ cd $(dirname $0) ; CWD=$(pwd) PRGNAM=bowtie -VERSION=${VERSION:-1.3.0} -BUILD=${BUILD:-1} +VERSION=${VERSION:-1.3.1} +BUILD=${BUILD:-2} TAG=${TAG:-_SBo} PKGTYPE=${PKGTYPE:-tgz} @@ -64,8 +64,8 @@ rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP rm -rf $PRGNAM-$VERSION-src -unzip $CWD/${PRGNAM}-${VERSION}-src.zip -cd $PRGNAM-$VERSION-src +tar xvf $CWD/${PRGNAM}-${VERSION}.tar.gz +cd $PRGNAM-$VERSION chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ @@ -73,14 +73,14 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -CFLAGS="$SLKCFLAGS" \ -CXXFLAGS="$SLKCFLAGS" \ +sed -i "s|-O3|$SLKCFLAGS -O3|" Makefile make install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM -install -D -m755 $PRGNAM-build $PKG/usr/bin/$PRGNAM-build -install -D -m755 $PRGNAM-build-s $PKG/usr/bin/$PRGNAM-build-s -install -D -m755 $PRGNAM-inspect $PKG/usr/bin/$PRGNAM-inspect +executables=$( ls bowtie-* ) +for b in ${executables[@]}; do + install -D -m755 $b $PKG/usr/bin/$b +done # Copy genomic data, scripts and more mkdir -p $PKG/usr/share/$PRGNAM |