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-rw-r--r--academic/bowtie2/bowtie2.SlackBuild29
1 files changed, 15 insertions, 14 deletions
diff --git a/academic/bowtie2/bowtie2.SlackBuild b/academic/bowtie2/bowtie2.SlackBuild
index fa8d2dfa04..37f440626e 100644
--- a/academic/bowtie2/bowtie2.SlackBuild
+++ b/academic/bowtie2/bowtie2.SlackBuild
@@ -1,9 +1,9 @@
-#!/bin/sh
+#!/bin/bash
# Slackware build script for bowtie2
# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com
-# Copyright 2018-2020 Rob van Nues sborg63@disroot.org
+# Copyright 2018-2024 Rob van Nues sborg63@disroot.org
#
# All rights reserved.
#
@@ -24,10 +24,13 @@
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+cd $(dirname $0) ; CWD=$(pwd)
+
PRGNAM=bowtie2
-VERSION=${VERSION:-2.4.2}
+VERSION=${VERSION:-2.5.3}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
+PKGTYPE=${PKGTYPE:-tgz}
if [ -z "$ARCH" ]; then
case "$( uname -m )" in
@@ -37,23 +40,21 @@ if [ -z "$ARCH" ]; then
esac
fi
-CWD=$(pwd)
+if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
+ echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
+ exit 0
+fi
+
TMP=${TMP:-/tmp/SBo}
PKG=$TMP/package-$PRGNAM
OUTPUT=${OUTPUT:-/tmp}
-if [ "$ARCH" = "i586" ]; then
- SLKCFLAGS="-O2 -march=i586 -mtune=i686"
- LIBDIRSUFFIX=""
-elif [ "$ARCH" = "i686" ]; then
- SLKCFLAGS="-O2 -march=i686 -mtune=i686"
- LIBDIRSUFFIX=""
-elif [ "$ARCH" = "x86_64" ]; then
+if [ "$ARCH" = "x86_64" ]; then
SLKCFLAGS="-O2 -fPIC"
LIBDIRSUFFIX="64"
else
- SLKCFLAGS="-O2"
- LIBDIRSUFFIX=""
+ printf "\n$ARCH is unsupported by $PRGNAM\n"
+ exit 1
fi
set -e
@@ -108,4 +109,4 @@ mkdir -p $PKG/install
cat $CWD/slack-desc > $PKG/install/slack-desc
cd $PKG
-/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz}
+/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE