1 files changed, 39 insertions, 0 deletions
diff --git a/academic/bpp1.9-phyl/caps_TreeTemplateTools.patch b/academic/bpp1.9-phyl/caps_TreeTemplateTools.patch
new file mode 100644
index 0000000000..b4f79029de
--- /dev/null
+++ b/academic/bpp1.9-phyl/caps_TreeTemplateTools.patch
@@ -0,0 +1,39 @@
+diff -pruN orig/Phyl/TreeTemplateTools.h new/Phyl/TreeTemplateTools.h
+--- orig/Phyl/TreeTemplateTools.h	2010-04-01 16:37:04.000000000 +0300
++++ new/Phyl/TreeTemplateTools.h	2017-02-03 14:33:11.000000000 +0200
+@@ -191,7 +191,7 @@ class TreeTemplateTools
+     static void dropLeaf(TreeTemplate<N>& tree, const std::string& leafName) throw (NodeNotFoundException, Exception)
+     {
+       N* leaf = tree.getNode(leafName);
+-      if (!leaf->hasfather())
++      if (!leaf->hasFather())
+         throw Exception("TreeTemplateTools::dropLeaf(). Leaf is the only node in the tree, can't remove it.");
+       N* parent = leaf->getFather();
+       if (parent->getNumberOfSons() > 2)
+@@ -203,7 +203,7 @@ class TreeTemplateTools
+       else if (parent->getNumberOfSons() == 2)
+       {
+         //We have to delete the parent node as well:
+-        N* brother = parent->getson(0);
++        N* brother = parent->getSon(0);
+         if (brother == leaf) brother = parent->getSon(1);
+         if (!parent->hasFather())
+         {
+@@ -212,7 +212,7 @@ class TreeTemplateTools
+           {
+             brother->setDistanceToFather(brother->getDistanceToFather() + leaf->getDistanceToFather());
+           }
+-          tree->setRootNode(brother);
++          tree.setRootNode(brother);
+           delete parent;
+           delete leaf;
+         }
+@@ -223,7 +223,7 @@ class TreeTemplateTools
+           {
+             brother->setDistanceToFather(brother->getDistanceToFather() + parent->getDistanceToFather());
+           }
+-          unsigned int pos = gParent->getsonPosition(parent);
++          unsigned int pos = gParent->getSonPosition(parent);
+           gParent->setSon(pos, brother);
+           delete parent;
+           delete leaf;