diff options
Diffstat (limited to 'academic/t_coffee/t_coffee.SlackBuild')
| -rw-r--r-- | academic/t_coffee/t_coffee.SlackBuild | 35 |
1 files changed, 15 insertions, 20 deletions
diff --git a/academic/t_coffee/t_coffee.SlackBuild b/academic/t_coffee/t_coffee.SlackBuild index 7329c61e2f..e54497f7a9 100644 --- a/academic/t_coffee/t_coffee.SlackBuild +++ b/academic/t_coffee/t_coffee.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for t_coffee -# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2020 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,15 +23,16 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=t_coffee -VERSION=${VERSION:-11.00.8cbe486} +VERSION=${VERSION:-13.41.0_git28bdc39} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} -SRCNAM=T-COFFEE_distribution_Version +TARNAM=tcoffee +COMMIT=28bdc39911d10d8597db8513f9515fb2ed7a9158 if [ -z "$ARCH" ]; then case "$( uname -m )" in - i?86) ARCH=i486 ;; + i?86) ARCH=i586 ;; arm*) ARCH=arm ;; *) ARCH=$( uname -m ) ;; esac @@ -42,8 +43,8 @@ TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i486" ]; then - SLKCFLAGS="-O2 -march=i486 -mtune=i686" +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "i686" ]; then SLKCFLAGS="-O2 -march=i686 -mtune=i686" @@ -61,9 +62,9 @@ set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT cd $TMP -rm -rf ${SRCNAM}_${VERSION} -tar xvf $CWD/${SRCNAM}_${VERSION}.tar.gz -cd ${SRCNAM}_${VERSION} +rm -rf ${TARNAM}-${COMMIT} +tar xvf $CWD/${TARNAM}-${COMMIT}.tar.gz +cd ${TARNAM}-${COMMIT} chown -R root:root . find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ @@ -71,24 +72,18 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -cd t_coffee_source +# Use our CFLAGS +sed -i "/^CFLAGS/s/=/+=/" t_coffee/src/makefile -CFLAGS="$SLKCFLAGS" \ -CC="gcc" \ -FCC="gfortran" \ -make -i all - -install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM -install -D -m755 TMalign $PKG/usr/bin/TMalign - -cd - +CFLAGS="$SLKCFLAGS" make t_coffee -C t_coffee/src +install -D -m755 t_coffee/src/$PRGNAM $PKG/usr/bin/$PRGNAM find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION cp -a \ - install license.txt \ + HOW_BUILD_WORKS.md README.md docs/*.rst \ $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References |