diff options
Diffstat (limited to 'academic/tophat')
| -rw-r--r-- | academic/tophat/slack-desc | 2 | ||||
| -rw-r--r-- | academic/tophat/tophat.SlackBuild | 12 | ||||
| -rw-r--r-- | academic/tophat/tophat.info | 6 |
3 files changed, 11 insertions, 9 deletions
diff --git a/academic/tophat/slack-desc b/academic/tophat/slack-desc index 72180b86b6..22fb29099f 100644 --- a/academic/tophat/slack-desc +++ b/academic/tophat/slack-desc @@ -14,6 +14,6 @@ tophat: high-throughput short read aligner Bowtie, and then analyzes the tophat: mapping results to identify splice junctions between exons. tophat: tophat: Home: http://tophat.cbcb.umd.edu/ -tophat: References: /usr/doc/tophat-2.1.1/References +tophat: https://github.com/infphilo/tophat/ tophat: tophat: diff --git a/academic/tophat/tophat.SlackBuild b/academic/tophat/tophat.SlackBuild index e579ff1e9a..f32fb590f5 100644 --- a/academic/tophat/tophat.SlackBuild +++ b/academic/tophat/tophat.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for tophat -# Copyright 2013-2016 Petar Petrov slackalaxy@gmail.com +# Copyright 2013-2019 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -23,13 +23,13 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=tophat -VERSION=${VERSION:-2.1.1} +VERSION=${VERSION:-2.1.2} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then case "$( uname -m )" in - i?86) ARCH=i486 ;; + i?86) ARCH=i586 ;; arm*) ARCH=arm ;; *) ARCH=$( uname -m ) ;; esac @@ -40,8 +40,8 @@ TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i486" ]; then - SLKCFLAGS="-O2 -march=i486 -mtune=i686" +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" LIBDIRSUFFIX="" elif [ "$ARCH" = "i686" ]; then SLKCFLAGS="-O2 -march=i686 -mtune=i686" @@ -69,6 +69,8 @@ find -L . \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; +./autogen.sh + CFLAGS="$SLKCFLAGS" \ CXXFLAGS="$SLKCFLAGS" \ ./configure \ diff --git a/academic/tophat/tophat.info b/academic/tophat/tophat.info index 32ecba312c..f2fc213b90 100644 --- a/academic/tophat/tophat.info +++ b/academic/tophat/tophat.info @@ -1,8 +1,8 @@ PRGNAM="tophat" -VERSION="2.1.1" +VERSION="2.1.2" HOMEPAGE="http://ccb.jhu.edu/software/tophat/" -DOWNLOAD="http://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz" -MD5SUM="4b2391de46457ba6b2b7268a9da593e4" +DOWNLOAD="https://github.com/infphilo/tophat/archive/v2.1.2/tophat-2.1.2.tar.gz" +MD5SUM="db844fd7f53c519e716cd6222e6195b2" DOWNLOAD_x86_64="" MD5SUM_x86_64="" REQUIRES="" |