diff options
Diffstat (limited to 'libraries/atlas/atlas.SlackBuild')
| -rw-r--r-- | libraries/atlas/atlas.SlackBuild | 379 |
1 files changed, 283 insertions, 96 deletions
diff --git a/libraries/atlas/atlas.SlackBuild b/libraries/atlas/atlas.SlackBuild index de0eff3b2f..2be0b386e8 100644 --- a/libraries/atlas/atlas.SlackBuild +++ b/libraries/atlas/atlas.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for ATLAS -# Copyright 2010 Serban Udrea <s.udrea@gsi.de> +# Copyright 2010-2016 Serban Udrea <s.udrea@gsi.de> # All rights reserved. # # Redistribution and use of this script, with or without modification, @@ -24,15 +24,15 @@ # POSSIBILITY OF SUCH DAMAGE. PRGNAM=atlas -VERSION=${VERSION:-3.8.3} -BUILD=${BUILD:-2} +VERSION=${VERSION:-3.10.3} +BUILD=${BUILD:-1} TAG=${TAG:-_SBo} if [ -z "$ARCH" ]; then case "$( uname -m )" in - i?86) ARCH=i486 ;; + i?86) ARCH=i586 ;; arm*) ARCH=arm ;; - *) ARCH=$( uname -m ) ;; + *) ARCH="$( uname -m )" ;; esac fi @@ -41,8 +41,8 @@ TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} -if [ "$ARCH" = "i486" ]; then - SLKCFLAGS="-O2 -march=i486 -mtune=i686" +if [ "$ARCH" = "i586" ]; then + SLKCFLAGS="-O2 -march=i586 -mtune=i686" LIBDIRSUFFIX="" BITSize="32" # Specifically for ATLAS elif [ "$ARCH" = "i686" ]; then @@ -55,26 +55,126 @@ elif [ "$ARCH" = "x86_64" ]; then BITSize="64" # Specifically for ATLAS fi -# You may change this to adjust the maximal size IN BYTES(!) that ATLAS -# is allowed to allocate. According to the ATLAS errata, a too small -# value may strongly reduce threaded performance. The default value -# here is 256MB. (The default value in the ATLAS source is 64MB.) -# -MAX_MALLOC=${MAX_MALLOC:-268435456} - # If you don't want to use architectural defaults set the following to # something like "no". +# USE_ARCH_DEFAULTS=${USE_ARCH_DEFAULTS:-yes} -# The path to a reference BLAS library. By default it is assumed that you -# have installed the netlib BLAS reference using the appropriate slackbuild -# from slackbuilds.org. If this is not the case, you have to run this script -# with another value for REF_BLAS. -REF_BLAS=${REF_BLAS:-/usr/lib${LIBDIRSUFFIX}/libblas.a} +# If you decide to use arch defaults and have some custom ones you may +# set the following variable to point to the directory containing these. +# +# If you decide to not use arch defauts and wish to create some after a build +# with full search, set the following variable to point to the directory where +# the file containing them should be placed. +# IMPORTANT: In this case, the file copied to ARCH_DEF_DIR will not be part of +# the ATLAS package, to avoid problems in case of an upgrade on the +# same machine. The value of ARCH_DEF_DIR will be written for your +# reference to the file named ARCH_DEF_DIR within the doc directory +# of ATLAS. +# +ARCH_DEF_DIR=${ARCH_DEF_DIR:-""} + +# If you are on another architecture than x86 and/or don't use gcc you need to +# set the following variable to "yes". +# +USE_DWALL=${USE_DWALL:-no} + +# You may wish to set the level 2 cache size to the proper value. The default +# is to deduce it from /proc/cpuinfo +# +L2_CACHE_SIZE=${L2_CACHE_SIZE:-"auto"} + +if [ "$L2_CACHE_SIZE" = "auto" ]; then + L2_CACHE_SIZE="$(cat /proc/cpuinfo |grep "cache size"| head -n 1| cut -d ":" -s -f2| cut -d " " -s -f2)" + L2_SIZE_UNIT="$(cat /proc/cpuinfo |grep "cache size"| head -n 1| cut -d " " -s -f4)" + case "$L2_SIZE_UNIT" in + "KB") L2_CACHE_SIZE=$(($L2_CACHE_SIZE * 1024)) + ;; + "MB") L2_CACHE_SIZE=$(($L2_CACHE_SIZE * 1024 * 1024)) + ;; + "GB") L2_CACHE_SIZE=$(($L2_CACHE_SIZE * 1024 * 1024 * 1024)) + ;; + esac +fi + +# Check the value of L2_CACHE_SIZE +# +case "$L2_CACHE_SIZE" in + ''|'0'|*[!0-9]*) echo "ERROR: The value of L2_CACHE_SIZE is not a strictly positive integer!" + exit 1 + ;; +esac + +# Set the (maximum) number of threads. If this is 0 just the serial libs get +# built, even on an SMP machine. By default it's set to -1 for autodetection. +# +NUM_THREADS=${NUM_THREADS:-"-1"} +case "$NUM_THREADS" in + '-1'|'0') echo -n # Do nothing + ;; + '1') NUM_THREADS="0" # One processor => no threading + ;; + ''|*[!0-9]*) echo "ERROR: NUM_THREADS has an improper value!" + exit 1 + ;; +esac + +if [ $NUM_THREADS -gt 1 ]; then + # On SMP machines one may want to set the processors to be used (see + # atlas_install.pdf, p. 13). By default the list of processor ID's is empty + # which means that ATLAS may use whatever is available. + # NOTE: This is incompatible with the autodetection of the number of threads. + # Therefore NUM_THREADS must be greater than 1. + # + USE_PROCESSORS=${USE_PROCESSORS:-""} + if [ -z "$USE_PROCESSORS" ]; then + MT_SWITCH="-t $NUM_THREADS" + else + MT_SWITCH="--force-tids=\"$NUM_THREADS $USE_PROCESSORS\"" + fi +else + MT_SWITCH="-t $NUM_THREADS" +fi + +# Decide upon building full LAPACK or not. Set LAPACK_SOURCE to the empty +# string, if you don't want a full LAPACK build. +# +LAPACK_SOURCE=${LAPACK_SOURCE:-"/usr/share/lapack-atlas/lapack.tgz"} +if [ -z "$LAPACK_SOURCE" ]; then + echo + echo "WARNING" + echo "WARNING: No LAPACK source specified. Just the highly restricted LAPACK" + echo " offered by ATLAS will get compiled!" + echo "WARNING" + echo + sleep 3 +else + tar -tf "$LAPACK_SOURCE" > /dev/null 2>&1 || \ + { echo "ERROR: Improper LAPACK source archive!" \ + && echo " Please check $LAPACK_SOURCE" \ + && echo " and set it properly! " \ + && exit 1; } # NOTE: Here we just test that we deal with a tar archive. + LAPACK_SOURCE="--with-netlib-lapack-tarfile=$LAPACK_SOURCE" + + # Change the following to yes if you would like to run the tests for LAPACK. + # + TEST_LAPACK="${TEST_LAPACK:-no}" + # Make Y or N out of yes, Yes, No, no, etc. + # + TEST_LAPACK=$(echo "$TEST_LAPACK"|cut -b 1|tr a-z A-Z) +fi + +# Decide upon building shared libraries or not. By default we ask for shared +# libs too. If one doesn't want this, she has to just set SHARED_SWITCH to the +# empty string. +# +SHARED_SWITCH=${SHARED_SWITCH:-"--shared"} -# Let's do a little check (that we deal with a regular file we can read). -[ -f "$REF_BLAS" -a -r "$REF_BLAS" ] || \ -{ echo "ERROR: Wrong path to reference BLAS library, exiting! " && exit 1; } +# This is the timer to be used for LAPACK. If you stay with gfortran, +# presently the default compiler on Slackware, you can leave the value as is. +# Otherwise, please read LAPACK's make.inc.example for more informations. +# +LAPACK_TIMER="${LAPACK_TIMER:-INT_ETIME}" # This is the system destination directory. When installing the # package produced by this script, ATLAS's files will be written to @@ -88,6 +188,7 @@ SYS_DESTDIR=${SYS_DESTDIR:-/usr} # Check if SYS_DESTDIR is an absolute path. If not, exit with error. # NOTE: The $ is used because echo adds a \n at the end of the string. +# echo $SYS_DESTDIR | grep -vE '/\.\./|/\.\.$' | grep -qE '^/' || \ { echo "ERROR: The system destination directory has no absolute path!" \ && echo " The value of SYS_DESTDIR is $SYS_DESTDIR" \ @@ -103,12 +204,10 @@ DEFAULT_DOCS=${DEFAULT_DOCS:-yes} # The build directory to be created within the source directory of # ATLAS. -BLDdir=BuildDir - -# Get the CPU frequency for good timing. -CPU_FREQ="$(cat /proc/cpuinfo |grep "cpu MHz"| head -n 1| cut -d ":" -s -f2| tr -d [:blank:])" +# +BLDdir="BuildDir" -set -e +set -e rm -rf $PKG mkdir -p $TMP $PKG $OUTPUT @@ -118,22 +217,22 @@ rm -rf $PRGNAM-$VERSION tar xvf $CWD/${PRGNAM}${VERSION}.tar.bz2 mv ATLAS $PRGNAM-$VERSION cd $PRGNAM-$VERSION - chown -R root:root . - find -L . \ - \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 -o -perm 511 \) \ - -exec chmod 755 {} \; -o \ - \( -perm 666 -o -perm 664 -o -perm 600 -o -perm 444 -o -perm 440 -o -perm 400 \) \ - -exec chmod 644 {} \; + \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ + -o -perm 511 \) -exec chmod 755 {} \; -o \ + \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# Make changes as suggested in the atlas errata. -cat $CWD/atlas.patch | sed -e s%XXX_MaxMalloc_XXX%$MAX_MALLOC% | patch -p1 - -# If architectural defaults are to be used, copy the file mentioned in the errata -# to the architectural defaults directory. +# Set the proper value to USE_ARCH_DEFAULTS, and the proper value to the +# configure switch needed in case you want to use custom arch defaults. +# +ARCH_DIR_SWITCH="" case "$USE_ARCH_DEFAULTS" in - [yY]|[yY][eE]|[yY][eE][sS]) cp "$CWD/AMD64K10h64SSE3.tgz" CONFIG/ARCHS; USE_ARCH_DEFAULTS="1" ;; + [yY]|[yY][eE]|[yY][eE][sS]) USE_ARCH_DEFAULTS="1" + [ -z "$ARCH_DEF_DIR" ] || \ + ARCH_DIR_SWITCH="-Ss ADdir $ARCH_DEF_DIR" + ;; *) USE_ARCH_DEFAULTS="0" ;; esac @@ -141,97 +240,185 @@ mkdir -p $BLDdir cd $BLDdir # Configure atlas. -# IMPORTANT: Here we assume that we are on a x86 machine (be it 32 or 64 bits) -# and gcc or icc is the compiler to be used. This should be presently -# a reasonable assumption with Slackware. Under other circumstances -# "-DPentiumCPS=$CPU_FREQ" has to be exchanged with "-DWALL". # -../configure -Si cputhrchk 0 -Si archdef "$USE_ARCH_DEFAULTS" -b "$BITSize" -D c \ --DPentiumCPS="$CPU_FREQ" -Fa alg -fPIC +case "$USE_DWALL" in + [yY]|[yY][eE]|[yY][eE][sS]) + # Here we assume that we aren't on a x86 machine + # and/or gcc isn't the compiler to be used. + # + ../configure $SHARED_SWITCH \ + --prefix="$SYS_DESTDIR" \ + $LAPACK_SOURCE \ + $MT_SWITCH \ + -Si archdef "$USE_ARCH_DEFAULTS" \ + $ARCH_DIR_SWITCH \ + -b "$BITSize" -D c -DWALL + ;; + *) + # Here we assume that we are on a x86 machine + # (be it 32 or 64 bits) and gcc is the compiler + # to be used. + # + # Get the CPU frequency for good timing. + # + CPU_FREQ="$(cat /proc/cpuinfo |grep "cpu MHz"| head -n 1| cut -d ":" -s -f2| tr -d [:blank:])" + # + ../configure $SHARED_SWITCH \ + --prefix="$SYS_DESTDIR" \ + $LAPACK_SOURCE \ + $MT_SWITCH \ + -Si archdef "$USE_ARCH_DEFAULTS" \ + $ARCH_DIR_SWITCH \ + -b "$BITSize" \ + -D c -DPentiumCPS="$CPU_FREQ" + ;; +esac -# NOTES ON THE FLAGS FOR CONFIGURE +# NOTES ON SOME FLAGS FOR CONFIGURE # -# -Si cputhrchk 0 means that configure actually does not care about CPU -# throttling. This is to avoid false positives. Thus the full responsibility -# stays now with the user of the script. +# SHARED_SWITCH = "--shared" asks for building the shared libraries too # -Si archdef "$USE_ARCH_DEFAULTS" means that we ignore or not architectural defaults depending # upon the value of "$USE_ARCH_DEFAULTS". # -b "$BITSize" tells ATLAS about the platform's bitsize, 32 or 64. -# -D c -DPentiumCPS="$CPU_FREQ" is for achieving good timing on x86 platforms with gcc or icc. -# -Fa alg -fPIC is for beeing able to create dynamic libs too. - -# The next two variables are set and their values are finally saved -# for using them to compile lapack. -# Remember the compiler name. -ATLAS_COMPILER="$(grep "F77 =" Make.inc | cut -d "=" -f1 --complement)" +# -D c -DPentiumCPS="$CPU_FREQ" is for achieving good timing on x86 platforms with gcc. +# -D c -DWALL is for achieving good timing on non x86 platforms and/or non gcc compilers -# Remember the fortran compilation flags. -ATLAS_F77FLAGS="$(grep "F77FLAGS =" Make.inc | cut -d "=" -f1 --complement)" +# Write the value of L2_CACHE_SIZE to Make.inc +# +sed -i -r Make.inc -e \ + "s%L2SIZE = -DL2SIZE=[0-9]+%L2SIZE = -DL2SIZE=$L2_CACHE_SIZE%" -# Set the path to the reference BLAS. -sed -i -e '/^ \+BLASlib/s%BLASlib = .*%BLASlib = '"$REF_BLAS"% \ - Make.inc +# Allow for deprecated LAPACK routines to get build in case of a full LAPACK +# installation. Also set the LAPACK timer to the desired value and add +# -frecursive to the compile flags, since this should help avoid problems +# with some functions which seem otherwise to not be thread safe. +# +if [ "$LAPACK_SOURCE" ]; then + sed -i ./src/lapack/reference/make.inc.example -e \ + "s%^#MAKEDEPRECATED *=.*Yes%MAKEDEPRECATED = Yes%" + sed -i ./interfaces/lapack/F77/src/Makefile -e \ + "s%NONE%$LAPACK_TIMER%" -e \ + "s%F77FLAGS)@%F77FLAGS) -frecursive@%" -e \ + "s%F77NOOPT)@%F77NOOPT) -frecursive@%" +fi -make -j1 +make build make check # If parallel libraries have been compiled check them too. +# if [ -f lib/libptcblas.a ]; then make ptcheck - PARALLEL_LIBS="yes" # We will use this when creating dynamic libs. fi -# Install the static libs created during the build process. -make install DESTDIR=$PKG$SYS_DESTDIR - -# Go to the ATLAS $BLDdir/lib directory and try to create and install -# the dynamic libraries. -# NOTE: The test for the presence of static parallel libs and the command to actually build the -# shared parallel libs are connected by a logical OR to make sure that the subshell -# does not exit with non-zero error code just because static parallel libs didn't -# get built. Therefore the test is successful if the variable PARALLEL_LIBS is unset or -# empty, i.e. when no static parallel libs got built. -( cd lib && make shared && \ - { [ "${PARALLEL_LIBS}1" = "1" ] || make ptshared; } && \ - cp -p *.so "$PKG$SYS_DESTDIR/lib" -) +# If the full LAPACK got build one may wish to test it too. +# +if [ "$LAPACK_SOURCE" ]; then + if [ "$TEST_LAPACK" = "Y" ]; then + ( cd src/lapack/reference + [ -e ./libtmglib.a ] || make tmglib + # Some testers segfault when build with -frecursive if one doesn't + # increase the stack size limit, thus it's better to remove this flag + # from make.inc + # + sed -i make.inc -e "s%-frecursive%%" + + # Now we have to set the proper library paths. Here for the serial libs. + # + ATLAS_LIBS="../../../../../lib/libf77blas.a ../../../../../lib/libcblas.a" + ATLAS_LIBS="$ATLAS_LIBS ../../../../../lib/libatlas.a" + LAPACK_LIB="../../../lib/liblapack.a" + + sed -i make.inc -e \ + "s%^BLASLIB *=.*%BLASLIB = $ATLAS_LIBS%" -e \ + "s%^CBLASLIB *=.*%CBLASLIB =%" -e \ + "s%^LAPACKLIB *=.*%LAPACKLIB = $LAPACK_LIB%" + + # Perform the tests. + # + make lapack_testing + + # Put the test results together + # + tar czf TEST_SERIAL_RESULTS.tgz TESTING/*.out + + # If threaded libs got build, we repeat the tests with them. + # + if [ -e ../../../lib/libptlapack.a ]; then + make cleantesting + ATLAS_LIBS="../../../../../lib/libptf77blas.a" + ATLAS_LIBS="$ATLAS_LIBS ../../../../../lib/libptcblas.a" + ATLAS_LIBS="$ATLAS_LIBS ../../../../../lib/libatlas.a -lpthread" + LAPACK_LIB="../../../lib/libptlapack.a" + sed -i make.inc -e \ + "s%^BLASLIB *=.*%BLASLIB = $ATLAS_LIBS%" -e \ + "s%^LAPACKLIB *=.*%LAPACKLIB = $LAPACK_LIB%" + make lapack_testing + tar czf TEST_PT_RESULTS.tgz TESTING/*.out + fi + ) + fi +fi + +make install DESTDIR=${PKG}${SYS_DESTDIR} + +# The install script (sometimes) "forgets" about libptlapack.a +# +cp -ua lib/libptlapack.a ${PKG}${SYS_DESTDIR}/lib/ || true find $PKG | xargs file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true # This is probably the easiest way to make sure that we install in the # proper place. -if [ ! -z $LIBDIRSUFFIX ]; then - mv $PKG$SYS_DESTDIR/lib $PKG$SYS_DESTDIR/lib${LIBDIRSUFFIX} +# +if [ "$LIBDIRSUFFIX" ]; then + mv ${PKG}${SYS_DESTDIR}/lib ${PKG}${SYS_DESTDIR}/lib${LIBDIRSUFFIX} fi # Create the doc directory for atlas and populate it. +# case "$DEFAULT_DOCS" in [nN]|[nN][oO]) DOC_DIR="$PKG$SYS_DESTDIR/doc/$PRGNAM-$VERSION" ;; *) DOC_DIR="$PKG/usr/doc/$PRGNAM-$VERSION" ;; esac - -mkdir -p $DOC_DIR -cp -a ../INSTALL.txt ../README ../doc $DOC_DIR - -# The following makefiles may be needed to merge atlas and lapack. -mkdir $DOC_DIR/MAKEFILES -cp -p Make.inc $DOC_DIR/MAKEFILES -cp -p lib/Makefile $DOC_DIR/MAKEFILES/Makefile.lib - -# Create a file with the build flags for atlas. Needed to merge -# ATLAS and LAPACK. The LAPACK SlackBuild will just have to source -# this file to find out the compiler used for ATLAS and the build -# flags. -echo "ATLAS_COMPILER=\"$ATLAS_COMPILER\"" > "$DOC_DIR/SETTINGS" -echo "ATLAS_F77FLAGS=\"$ATLAS_F77FLAGS\"" >> "$DOC_DIR/SETTINGS" -sed -i -e s'%=" %="%' "$DOC_DIR/SETTINGS" # Remove the extra space after the "=" sign -echo "ATLAS_NOOPT=\"-O0\" #Eventually add more options within the quotes." >> "$DOC_DIR/SETTINGS" +mkdir -p ${DOC_DIR} +cp -a ../INSTALL.txt ../README ../doc ${DOC_DIR} # Add the Slackbuild script and README.SLACKWARE to the docs. +# cat $CWD/$PRGNAM.SlackBuild > $DOC_DIR/$PRGNAM.SlackBuild cat $CWD/README.SLACKWARE > $DOC_DIR/README.SLACKWARE +# Create custom arch defaults if appropriate. +# +if [ "$USE_ARCH_DEFAULTS" = "0" ]; then + if [ "$ARCH_DEF_DIR" ]; then + ( cd ARCHS + make ArchNew + make tarfile + cp -ua *.tar.* "$ARCH_DEF_DIR" + ) + echo "$ARCH_DEF_DIR" > $DOC_DIR/ARCH_DEF_DIR + fi +fi + +# If the full LAPACK got installed add also some relevant files from its source +# tree. +# +if [ "$LAPACK_SOURCE" ]; then + ( cd src/lapack/reference + LAPACK_VER=$(./INSTALL/testversion | sed -e "s% *LAPACK *%%" -e "s% *%%g") + LAPACK_DOC_DIR="${DOC_DIR}/lapack-$LAPACK_VER" + mkdir "$LAPACK_DOC_DIR" + cp -a LICENSE README "$LAPACK_DOC_DIR" + + # Copy the test results if present (getting around "set -e" with "echo -n"). + # + cp -a TEST_* "$LAPACK_DOC_DIR" 2>/dev/null || echo -n + ) +fi + mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc |