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* academic/cistrome-mdseqpos: Fix deps. Petar Petrov2022-11-121-1/+1
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/biopython: Fix deps. Petar Petrov2022-11-121-1/+1
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/pamlX: Rebuild for paml update. Petar Petrov2022-10-152-4/+5
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/paml: Updated for version 4.10.5. Petar Petrov2022-10-153-34/+19
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/muscle5: Added (MUSCLE 5: Next-generation MUSCLE) Petar Petrov2022-10-156-0/+273
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* graphics/mtpaint: Updated for version 3.50.09. Petar Petrov2022-10-152-9/+15
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/jalview: Updated for version 2.11.2.4. Petar Petrov2022-10-153-5/+6
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/IGV: Updated for version 2.14.1. Petar Petrov2022-10-152-4/+7
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/hyphy: Updated for version 2.5.42. Petar Petrov2022-10-152-4/+4
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/gelemental: Updated for version 2.0.1. Petar Petrov2022-10-152-7/+10
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* system/clamtk: Updated for version 6.14. Petar Petrov2022-10-152-5/+5
| | | | Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/bowtie: Updated for version 1.3.1. Petar Petrov2022-10-152-6/+6
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/mumsa: Added (A tool to assess MSA quality) Petar Petrov2022-09-255-0/+152
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/iqtree: Added (Efficient phylogenomic software by ML) Petar Petrov2022-09-095-0/+212
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/vCAPS_coevolution: Added (Coevolution Analysis) Petar Petrov2022-09-097-0/+357
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp1.9-phyl: Added (Bio++ 1.9 Phyl Library) Petar Petrov2022-09-095-0/+197
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp1.9-seq: Added (Bio++ 1.9 Seq Library) Petar Petrov2022-09-094-0/+155
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp1.9-numcalc: Added (Bio++ 1.9 NumCalc Library) Petar Petrov2022-09-094-0/+155
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp1.9-utils: Added (Bio++ 1.9 Utils Library) Petar Petrov2022-09-094-0/+159
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/prank-msa: Added (probabilistic multiple alignment program) Petar Petrov2022-09-084-0/+171
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bppsuite: Added (Bio++ program suite) Petar Petrov2022-09-084-0/+153
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp-popgen: Added (Bio++ Population Genetics Library) Petar Petrov2022-09-084-0/+140
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp-phyl-omics: Added (Bio++ Phylogenetic Omics Library) Petar Petrov2022-09-084-0/+140
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp-seq-omics: Added (Bio++ Sequence Omics Library) Petar Petrov2022-09-084-0/+142
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp-phyl: Added (Bio++ Phylogenetic Library) Petar Petrov2022-09-084-0/+140
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp-seq: Added (Bio++ Sequence library) Petar Petrov2022-09-084-0/+141
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/bpp-core: Added (Bio++ Core Library) Petar Petrov2022-09-085-0/+156
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/ugene: Updated for version 44.0. Petar Petrov2022-09-083-22/+43
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/mafft: Updated for version 7.505. Petar Petrov2022-09-082-5/+5
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/hyphy: Updated for version 2.5.41. Petar Petrov2022-09-082-5/+5
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/DendroPy: Updated for version 4.5.1. Petar Petrov2022-09-082-5/+5
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/seaview: Updated for version 5.0.5. Petar Petrov2022-09-042-4/+4
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/ncbi-blast+: Updated for version 2.13.0. Petar Petrov2022-09-042-4/+10
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/PhyML: Updated for version 3.3.20220408. Petar Petrov2022-09-042-35/+39
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/meme-suite: Updated for version 5.4.1. Petar Petrov2022-09-042-5/+5
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/meme-db-motif: Updated for version 12.23. Petar Petrov2022-09-042-4/+4
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/genometools: Updated for version 1.6.2. Petar Petrov2022-09-043-96/+5
| | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/datamash: Updated for version 1.8. Petar Petrov2022-09-042-6/+6
Signed-off-by: Dave Woodfall <dave@slackbuilds.org>
* academic/snpEff: Build cleanup. Petar Petrov2022-08-131-5/+9
| | | | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/bowtie: Updated install all binaries. Petar Petrov2022-08-131-7/+7
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/SeqMonk: Updated for version 1.48.1. Petar Petrov2022-08-062-6/+10
| | | | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/spades: Updated for version 3.15.4. Petar Petrov2022-08-062-5/+7
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/seqkit: Updated for version 2.2.0. Petar Petrov2022-08-062-7/+7
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/biopython: Updated for version 1.79. Petar Petrov2022-08-062-8/+6
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/fiji: Updated for version 20220414_1745. Petar Petrov2022-08-063-23/+11
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/cap3: DOWLOAD updated. Petar Petrov2022-08-062-4/+7
| | | | | | Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/clustalx: Updated to use qmake-qt5. BUILD bumped. Petar Petrov2022-08-061-3/+3
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/IGV: Updated for version 2.13.2. Petar Petrov2022-08-063-6/+6
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/jalview: Updated for version 2.11.2.3. Petar Petrov2022-08-062-5/+5
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
* academic/megax: Updated for version 11.0.11_1. Petar Petrov2022-08-063-12/+16
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>