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* academic/cistrome-MACS: Added (Model-based Analysis of ChIP-Seq). Petar Petrov2013-12-145-0/+142
* academic/cistrome-CEAS: Added (Cis-regulatory Element Annotation). Petar Petrov2013-12-145-0/+139
* academic/EMBASSY: Updated for version 6.6.0. Petar Petrov2013-12-142-45/+45
* academic/EMBOSS: Updated for version 6.6.0. Petar Petrov2013-12-143-12/+11
* academic/vcftools: Added (A program designed for working with VCF). Petar Petrov2013-12-147-0/+217
* academic/ugene: Updated for version 1.13.0. Petar Petrov2013-12-144-31/+51
* academic/tophat: Added (Splice junction mapper for RNA-Seq reads). Petar Petrov2013-12-145-0/+152
* academic/topdraw: Added (A sketchpad for protein topology diagrams). Petar Petrov2013-12-148-0/+123
* academic/tabix: Added (Generic indexer). Petar Petrov2013-12-144-0/+140
* academic/t_coffee: Updated for version 10.00.r1613. Petar Petrov2013-12-143-11/+11
* academic/primer3: Updated for version 2.3.6. Petar Petrov2013-12-142-12/+12
* academic/pamlX: Added (A GUI for PAML). Petar Petrov2013-12-146-0/+158
* academic/paml: Added (Phylogenetic Analysis by Maximum Likelihood). Petar Petrov2013-12-146-0/+214
* academic/mrbayes: Updated for version 3.2.2. Petar Petrov2013-12-143-11/+11
* academic/mkDSSP: Updated for version 2.2.1. Petar Petrov2013-12-143-12/+12
* academic/mafft: Updated for version 7.130. Petar Petrov2013-12-143-11/+11
* academic/cufflinks: Added (reference-guided assembler for RNA-Seq). Petar Petrov2013-12-145-0/+190
* academic/samtools: Added (Sequence Alignment/Map Tools). Petar Petrov2013-12-145-0/+197
* academic/bowtie2: Added (A tool for aligning sequencing reads). Petar Petrov2013-12-145-0/+152
* academic/bowtie: Updated for version 1.0.0. Petar Petrov2013-12-147-13/+118
* academic/PhyML: Updated for version 20131112. Petar Petrov2013-12-145-18/+117
* academic/geoserver-pyramid: Added (pyramid data store support) Benjamin Trigona-Harany2013-12-144-0/+89
* academic/geoserver-control-flow: Added (request rate limitation) Benjamin Trigona-Harany2013-12-144-0/+90
* academic/geogit: Updated for version 0.6.0. Benjamin Trigona-Harany2013-12-052-4/+4
* academic/OWSLib: Added (OGC Web Service utility library) Benjamin Trigona-Harany2013-12-024-0/+117
* academic/pointcloud: Added (PostgreSQL extension for storing LiDAR data) Benjamin Trigona-Harany2013-12-024-0/+134
* academic/pdal: Added (point data abstraction library) Benjamin Trigona-Harany2013-12-024-0/+152
* academic/Fiona: Added (Python interface for OGR) Benjamin Trigona-Harany2013-12-024-0/+127
* academic/Shapely: Added (geometric objects, predicates, and operations in Pyt... Benjamin Trigona-Harany2013-12-024-0/+119
* academic/osm2pgrouting: Added (import OSM data into pgRouting database) Benjamin Trigona-Harany2013-12-024-0/+132
* academic/geoserver-wps: Added (WPS support for GeoServer) Benjamin Trigona-Harany2013-12-024-0/+89
* academic/geoserver-css: Added (CSS styling support for GeoServer) Benjamin Trigona-Harany2013-12-024-0/+90
* academic/geoserver: Added (geospatial server) Benjamin Trigona-Harany2013-12-027-0/+154
* academic/pyproj: Added (Python interface to the PROJ.4 library) Benjamin Trigona-Harany2013-12-024-0/+130
* academic/convertall: Fixed file ending with no newline. dsomero2013-11-301-1/+2
* various: Replace chmod command with find command from template. Heinz Wiesinger2013-11-256-6/+30
* academic/grass: Fix some bashisms. dsomero2013-11-241-16/+13
* academic/qtoctave: Update Email for Mauro Giachero Willy Sudiarto Raharjo2013-11-251-1/+1
* academic/GMT: Removed (no SBo maintainer) Robby Workman2013-11-245-201/+0
* academic/engauge: Removed (build failure) Robby Workman2013-11-247-141/+0
* various: Set hashbang line as /bin/sh. dsomero2013-11-236-6/+6
* various: Update find command to match template. dsomero2013-11-22125-219/+219
* various: Fix SlackBuild formatting and comment nit picks. dsomero2013-11-2268-229/+199
* various: Fix slack-desc formatting and comment nit picks. dsomero2013-11-22110-610/+617
* various: Fix info formatting. dsomero2013-11-221-1/+1
* academic/mpqc: Removed (abandoned by SBo maintainer) Daniil Bratashov2013-11-225-150/+0
* academic/mopac7: Removed (abandoned by SBo maintainer) Daniil Bratashov2013-11-224-123/+0
* academic/xephem: Forced to use -j1. David Spencer2013-11-211-1/+1
* academic/verilog: Forced to use -j1. David Spencer2013-11-211-2/+2
* academic/units: Forced to use -j1. David Spencer2013-11-211-1/+1