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* academic/xiphos: Updated for version 4.0.7. Tim Dickson2017-10-213-8/+37
* academic/qalculate-gtk: Updated for version 2.1.0 Larry Hajali2017-10-142-4/+4
* academic/libqalculate: Updated for version 2.1.0 Larry Hajali2017-10-142-4/+4
* academic/PhyTime: Removed (Included in PhyML). Willy Sudiarto Raharjo2017-10-116-1743/+0
* academic/meme-suite: Added (Motif based sequence analysis tools). Petar Petrov2017-10-115-0/+265
* academic/hyphy: Added (Hypothesis Testing using Phylogenies). Petar Petrov2017-10-115-0/+216
* academic/pal2nal: Added (Create a codon-based DNA alignment). Petar Petrov2017-10-115-0/+119
* academic/zotero: Updated for version 5.0.21. Petar Petrov2017-10-112-12/+8
* academic/wehi-weasel: Updated for version 3.4.2.17. Petar Petrov2017-10-112-6/+6
* academic/vcftools: Updated for version 0.1.15. Petar Petrov2017-10-112-9/+7
* academic/ugene: Updated for version 1.27.0. Petar Petrov2017-10-113-6/+6
* academic/spades: Updated for version 3.11.1. Petar Petrov2017-10-112-4/+4
* academic/snpEff: Updated for version 4.3r. Petar Petrov2017-10-112-5/+5
* academic/prank-msa: Updated for version 170427. Petar Petrov2017-10-113-7/+7
* academic/megacc: Updated for version 7.0.26_1. Petar Petrov2017-10-112-5/+5
* academic/finchtv: Updated for version 1.3.1. Petar Petrov2017-10-113-11/+13
* academic/exonerate: Updated for version 2.4.0. Petar Petrov2017-10-112-4/+4
* academic/cutadapt: Updated for version 1.14. Petar Petrov2017-10-112-4/+4
* academic/cistrome-mdseqpos: Updated for v. git_20170829_6334683. Petar Petrov2017-10-113-15/+15
* academic/cistrome-extra: Updated for version git_20170829_6334683. Petar Petrov2017-10-112-12/+12
* academic/bwa: Updated for version 0.7.16a. Petar Petrov2017-10-113-6/+6
* academic/bppsuite: Updated for version 2.3.1. Petar Petrov2017-10-112-8/+7
* academic/bpp-popgen: Updated for version 2.3.1. Petar Petrov2017-10-112-9/+7
* academic/bpp-phyl-omics: Updated for version 2.3.1. Petar Petrov2017-10-113-10/+8
* academic/bpp-seq-omics: Updated for version 2.3.1. Petar Petrov2017-10-112-9/+7
* academic/bpp-phyl: Updated for version 2.3.1. Petar Petrov2017-10-112-9/+7
* academic/bpp-seq: Updated for version 2.3.1. Petar Petrov2017-10-112-9/+7
* academic/bpp-core: Updated for version 2.3.1. Petar Petrov2017-10-112-9/+7
* academic/archaeopteryx: Updated for version 0.9920b. Petar Petrov2017-10-113-6/+6
* academic/PhyML: Updated for version 3.3.20170530. Petar Petrov2017-10-114-26/+34
* academic/dakota: Install the doinst.sh file. Matteo Bernardini2017-10-111-0/+1
* academic/FCSalyzer: Updated for version 0.9.14_alpha. Petar Petrov2017-10-112-5/+5
* academic/mafft: Switch to https. Willy Sudiarto Raharjo2017-10-072-3/+3
* academic/Mnemosyne: Fix whitespaces. Willy Sudiarto Raharjo2017-10-071-1/+0
* academic/suitesparse: Updated for version 4.5.6 Christoph Willing2017-10-072-4/+4
* academic/armadillo: Updated for version 8.100.0. Benjamin Trigona-Harany2017-10-073-12/+12
* academic/bibletime: Updated for version 2.11.1. Tim Dickson2017-10-043-5/+4
* academic/fet: Updated for version 5.33.1. R.S.Ananda Murthy2017-09-302-4/+4
* academic/OpenFOAM: Fix build. David Spencer2017-09-301-4/+5
* academic/veusz: Updated for version 2.0.1. Fellype do Nascimento2017-09-303-23/+21
* academic/bppsuite: Fix new github md5sum. David Spencer2017-09-241-1/+1
* academic/Mnemosyne: Updated for version 2.5. R. S. Ananda Murthy2017-09-243-10/+17
* academic/dakota: Added (optimization toolkit). Lorenzo Trevisan2017-09-237-0/+176
* academic/OpenFOAM: Added (computational fluid dynamics). Lorenzo Trevisan2017-09-235-0/+141
* academic/novocraft: Added (map short reads onto reference genome). Rob van Nues2017-09-167-0/+156
* academic/flexbar: Added (barcode and adapter removal). Rob van Nues2017-09-164-0/+150
* academic/pysam: Added (read/write genomic data sets). Rob van Nues2017-09-164-0/+124
* academic/veusz: Updated for version 1.27. Fellype do Nascimento2017-09-042-4/+4
* academic/qalculate-gtk: Updated for version 2.0.0 Larry Hajali2017-09-023-74/+4
* academic/libqalculate: Updated for version 2.0.0 Larry Hajali2017-09-022-5/+5