From 32bfc419ebdc157ffc697d834c340552bbdcaa32 Mon Sep 17 00:00:00 2001
From: Petar Petrov <slackalaxy@gmail.com>
Date: Fri, 29 Jul 2022 22:20:39 +0700
Subject: academic/EMBOSS: Update binaries location.

Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
---
 academic/EMBOSS/EMBOSS.SlackBuild | 23 +++++++++++++++++------
 1 file changed, 17 insertions(+), 6 deletions(-)

diff --git a/academic/EMBOSS/EMBOSS.SlackBuild b/academic/EMBOSS/EMBOSS.SlackBuild
index b3546bc77d..bc69dbfcb6 100644
--- a/academic/EMBOSS/EMBOSS.SlackBuild
+++ b/academic/EMBOSS/EMBOSS.SlackBuild
@@ -2,7 +2,7 @@
 
 # Slackware build script for EMBOSS
 
-# Copyright 2011-2021  Petar Petrov slackalaxy@gmail.com
+# Copyright 2011-2022  Petar Petrov slackalaxy@gmail.com
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -26,7 +26,7 @@ cd $(dirname $0) ; CWD=$(pwd)
 
 PRGNAM=EMBOSS
 VERSION=${VERSION:-6.6.0}
-BUILD=${BUILD:-3}
+BUILD=${BUILD:-4}
 TAG=${TAG:-_SBo}
 PKGTYPE=${PKGTYPE:-tgz}
 
@@ -38,9 +38,6 @@ if [ -z "$ARCH" ]; then
   esac
 fi
 
-# If the variable PRINT_PACKAGE_NAME is set, then this script will report what
-# the name of the created package would be, and then exit. This information
-# could be useful to other scripts.
 if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then
   echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE"
   exit 0
@@ -86,7 +83,8 @@ CFLAGS="$SLKCFLAGS" \
 CXXFLAGS="$SLKCFLAGS" \
 ./configure \
   --prefix=/usr \
-  --libdir=/usr/lib${LIBDIRSUFFIX} \
+  --libdir=/usr/lib${LIBDIRSUFFIX}/$PRGNAM \
+  --bindir=/usr/lib${LIBDIRSUFFIX}/$PRGNAM/bin \
   --with-x \
   --sysconfdir=/etc \
   --localstatedir=/var \
@@ -96,6 +94,15 @@ CXXFLAGS="$SLKCFLAGS" \
 make
 make install DESTDIR=$PKG
 
+# Make jEmboss find the binaries
+sed -i "s|/usr/bin/|/usr/lib${LIBDIRSUFFIX}/$PRGNAM/bin/|g" $PKG/usr/share/EMBOSS/jemboss/resources/jemboss.properties
+sed -i "s|/usr/bin:|/usr/lib${LIBDIRSUFFIX}/$PRGNAM:/usr/bin:|g" $PKG/usr/share/EMBOSS/jemboss/resources/jemboss.properties
+
+mkdir -p $PKG/usr/bin
+cd $PKG/usr/bin
+mv $PKG/usr/lib${LIBDIRSUFFIX}/$PRGNAM/bin/runJemboss.sh .
+cd -
+
 find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
   | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
 
@@ -106,6 +113,10 @@ cp -a \
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
 
+cd $PKG/usr/doc/$PRGNAM-$VERSION
+ln -s ../../share/$PRGNAM/doc .
+cd -
+
 mkdir -p $PKG/usr/share/{applications,pixmaps}
 cp $CWD/$PRGNAM.desktop $PKG/usr/share/applications
 cp $CWD/$PRGNAM.png $PKG/usr/share/pixmaps
-- 
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