From 4ce886af277886c629ab55efeb23b07874369c00 Mon Sep 17 00:00:00 2001
From: Petar Petrov <slackalaxy@gmail.com>
Date: Sun, 8 Jul 2018 19:42:08 +0100
Subject: academic/primer3: Updated for version 2.4.0.

Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
---
 academic/primer3/primer3.SlackBuild | 32 +++++++++++++++++++-------------
 1 file changed, 19 insertions(+), 13 deletions(-)

(limited to 'academic/primer3/primer3.SlackBuild')

diff --git a/academic/primer3/primer3.SlackBuild b/academic/primer3/primer3.SlackBuild
index 8e60d3fe02..d3ae1b399c 100644
--- a/academic/primer3/primer3.SlackBuild
+++ b/academic/primer3/primer3.SlackBuild
@@ -2,7 +2,7 @@
 
 # Slackware build script for primer3
 
-# Copyright 2011-2016 Petar Petrov slackalaxy@gmail.com
+# Copyright 2011-2018 Petar Petrov slackalaxy@gmail.com
 # All rights reserved.
 #
 # Redistribution and use of this script, with or without modification, is
@@ -23,13 +23,13 @@
 #  ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 PRGNAM=primer3
-VERSION=${VERSION:-2.3.7}
+VERSION=${VERSION:-2.4.0}
 BUILD=${BUILD:-1}
 TAG=${TAG:-_SBo}
 
 if [ -z "$ARCH" ]; then
   case "$( uname -m )" in
-    i?86) ARCH=i486 ;;
+    i?86) ARCH=i586 ;;
     arm*) ARCH=arm ;;
        *) ARCH=$( uname -m ) ;;
   esac
@@ -40,8 +40,8 @@ TMP=${TMP:-/tmp/SBo}
 PKG=$TMP/package-$PRGNAM
 OUTPUT=${OUTPUT:-/tmp}
 
-if [ "$ARCH" = "i486" ]; then
-  SLKCFLAGS="-O2 -march=i486 -mtune=i686"
+if [ "$ARCH" = "i586" ]; then
+  SLKCFLAGS="-O2 -march=i586 -mtune=i686"
   LIBDIRSUFFIX=""
 elif [ "$ARCH" = "i686" ]; then
   SLKCFLAGS="-O2 -march=i686 -mtune=i686"
@@ -69,6 +69,9 @@ find -L . \
  \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \
  -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
 
+# Thanks to Debian for the patch
+patch -p1 -i $CWD/gcc-7.patch
+
 cd ./src
 
 # Use our CFLAGS
@@ -81,8 +84,8 @@ CFLAGS="$SLKCFLAGS" \
 CXXFLAGS="$SLKCFLAGS" \
 make
 
-# This is recommended, but the tests take a really long time.
-# Be patient if you uncomment the next line.
+# This is recommended, but the tests take a really long time. Be patient
+# if you uncomment the line below.
 # make test
 
 install -D -m755 primer3_core $PKG/usr/bin/primer3_core
@@ -97,18 +100,21 @@ ln -s primer3_core primer32_core
 # Copy configuration files and settings to /usr/share
 cd $TMP/$PRGNAM-$VERSION
 mkdir -p $PKG/usr/share/$PRGNAM
-cp -a src/primer3_config \
-  primer3_v1_1_4_default_settings.txt \
-  primer3web_v0_4_0_default_settings.txt \
-  primer3web_v3_0_0_default_settings.txt \
-  $PKG/usr/share/$PRGNAM
+cp -a settings_files src/primer3_config $PKG/usr/share/$PRGNAM
+
+# Copy the man pages from Debian
+mkdir -p $PKG/usr/man/man1
+cp $CWD/man1/* $PKG/usr/man/man1
 
 find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \
   | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true
 
+find $PKG/usr/man -type f -exec gzip -9 {} \;
+for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done
+
 mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
 cp -a \
-  src/release_notes.txt COPYING.txt example primer3_manual.htm \
+  src/{release_notes.txt,primer3_manual.htm} LICENSE example README.md  \
   $PKG/usr/doc/$PRGNAM-$VERSION
 cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
 cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References
-- 
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