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| author |   Petar Petrov <petar.petrov@student.oulu.fi> | 2014-04-09 16:58:43 +0700 |
|---|---|---|
| committer |   Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2014-04-09 16:58:43 +0700 |
| commit | 820b8bf747c7847e9d541152121b4f1b19aa2da6 (patch) | |
| tree | fafc49bcc0fa76d270e6a3c955e1f4e6818b90af /academic/bwa/bwa.SlackBuild | |
| parent | d5c3e85ba53b251eb011a3101f49203d9436dbf5 (diff) | |
| download | slackbuilds-820b8bf747c7847e9d541152121b4f1b19aa2da6.tar.gz slackbuilds-820b8bf747c7847e9d541152121b4f1b19aa2da6.tar.xz | |
academic/bwa: Updated for version 0.7.8.
Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic/bwa/bwa.SlackBuild')
| -rw-r--r-- | academic/bwa/bwa.SlackBuild | 11 |
1 files changed, 4 insertions, 7 deletions
diff --git a/academic/bwa/bwa.SlackBuild b/academic/bwa/bwa.SlackBuild index d38dfbb9fa..aa7528b5da 100644 --- a/academic/bwa/bwa.SlackBuild +++ b/academic/bwa/bwa.SlackBuild @@ -23,7 +23,7 @@ # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. PRGNAM=bwa -VERSION=${VERSION:-0.7.7} +VERSION=${VERSION:-0.7.8} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} @@ -72,6 +72,7 @@ find -L . \ # Use our CFLAGS/CXXFLAGS sed -i "/^C.*.*FLAGS/s/=/+=/" Makefile +# Thanks to Willy for the -msse2 fix! CFLAGS="$SLKCFLAGS -msse2" \ CXXFLAGS="$SLKCFLAGS" \ make @@ -80,9 +81,7 @@ install -D -m755 $PRGNAM $PKG/usr/bin/$PRGNAM install -D -m644 $PRGNAM.1 $PKG/usr/man/man1/$PRGNAM.1 mkdir -p $PKG/usr/share/$PRGNAM -cp -a \ - qualfa2fq.pl xa2multi.pl \ - $PKG/usr/share/$PRGNAM +cp -a qualfa2fq.pl xa2multi.pl $PKG/usr/share/$PRGNAM find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true @@ -91,9 +90,7 @@ find $PKG/usr/man -type f -exec gzip -9 {} \; for i in $( find $PKG/usr/man -type l ) ; do ln -s $( readlink $i ).gz $i.gz ; rm $i ; done mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION -cp -a \ - ChangeLog COPYING README.md \ - $PKG/usr/doc/$PRGNAM-$VERSION +cp -a ChangeLog COPYING README.md $PKG/usr/doc/$PRGNAM-$VERSION cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild cat $CWD/References > $PKG/usr/doc/$PRGNAM-$VERSION/References |