summaryrefslogtreecommitdiffstats
path: root/academic/pysam/README
blob: 605936f07696566e422a6d8fe556efbc03c046a7 (plain)
1
2
3
4
5
6
7
Pysam is a python module for reading and manipulating files in the
SAM/BAM format. The SAM/BAM format is a way to store efficiently large
numbers of alignments (`Li 2009`_), such as those routinely created by
next-generation sequencing methods.

Pysam is a lightweight wrapper of the samtools_ C-API. Pysam also
includes an interface for tabix_.