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| author |   Petar Petrov <slackalaxy@gmail.com> | 2016-11-22 20:27:29 +0000 |
|---|---|---|
| committer |   Willy Sudiarto Raharjo <willysr@slackbuilds.org> | 2016-11-26 11:47:24 +0700 |
| commit | 592919638f5a43810391d434b063ffdec7b8d955 (patch) | |
| tree | 01931fddcdd099beb6fe05f0d670805cc0cafca8 /academic/perlprimer | |
| parent | bd3e6b342b6bb97c22824ea6743746af486125d7 (diff) | |
| download | slackbuilds-592919638f5a43810391d434b063ffdec7b8d955.tar.gz slackbuilds-592919638f5a43810391d434b063ffdec7b8d955.tar.xz | |
academic/perlprimer: Updated for version 1.1.21.
Signed-off-by: David Spencer <idlemoor@slackbuilds.org>
Diffstat (limited to 'academic/perlprimer')
| -rw-r--r-- | academic/perlprimer/01_sytaxerrors.patch (renamed from academic/perlprimer/sytaxerrors.patch) | 0 | ||||
| -rw-r--r-- | academic/perlprimer/02_fix-defined-slist.patch | 11 | ||||
| -rw-r--r-- | academic/perlprimer/perlprimer.SlackBuild | 8 |
3 files changed, 17 insertions, 2 deletions
diff --git a/academic/perlprimer/sytaxerrors.patch b/academic/perlprimer/01_sytaxerrors.patch index 45b9cd570d..45b9cd570d 100644 --- a/academic/perlprimer/sytaxerrors.patch +++ b/academic/perlprimer/01_sytaxerrors.patch diff --git a/academic/perlprimer/02_fix-defined-slist.patch b/academic/perlprimer/02_fix-defined-slist.patch new file mode 100644 index 0000000000..38b375c844 --- /dev/null +++ b/academic/perlprimer/02_fix-defined-slist.patch @@ -0,0 +1,11 @@ +--- orig/perlprimer.pl 2016-11-22 21:06:25.135978000 +0200 ++++ new/perlprimer.pl 2016-11-22 21:08:09.001971413 +0200 +@@ -5226,7 +5226,7 @@ sub generate_report { + } + + my ($hlist_sel) = $$hlist_ref->selectionGet; +- unless (defined(@$slist) && defined($hlist_sel)) { ++ unless (@$slist && defined($hlist_sel)) { + dialogue("The Generate Report function saves the statistics and alignment of a particular primer pair - please select a primer pair first"); + return; + } diff --git a/academic/perlprimer/perlprimer.SlackBuild b/academic/perlprimer/perlprimer.SlackBuild index 182c189b73..8e681db655 100644 --- a/academic/perlprimer/perlprimer.SlackBuild +++ b/academic/perlprimer/perlprimer.SlackBuild @@ -24,7 +24,7 @@ PRGNAM=perlprimer VERSION=${VERSION:-1.1.21} -BUILD=${BUILD:-2} +BUILD=${BUILD:-3} TAG=${TAG:-_SBo} ARCH=noarch @@ -50,7 +50,11 @@ find -L . \ -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; # Thanks to Debian for the patch! -patch -p1 -i $CWD/sytaxerrors.patch +patch -p1 -i $CWD/01_sytaxerrors.patch + +# A quick fix to this issue: +# https://bugs.launchpad.net/ubuntu/+source/perlprimer/+bug/1575074 +patch -p1 -i $CWD/02_fix-defined-slist.patch install -D -m755 perlprimer.pl $PKG/usr/bin/perlprimer.pl install -D -m644 gcg.603 $PKG/usr/share/$PRGNAM/gcg.603 |