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author Rob van Nues <sborg63@disroot.org>2020-10-09 02:23:23 +0100
committer Willy Sudiarto Raharjo <willysr@slackbuilds.org>2020-10-10 10:18:46 +0700
commiteb54dd298a32662ab7cbfdd26cca9a78f9557218 (patch)
tree2f0b7d97284e559402682ee76dc86575025886ff /academic
parent0074529fa74b9ea924793a4b17bc3b99103592cb (diff)
downloadslackbuilds-eb54dd298a32662ab7cbfdd26cca9a78f9557218.tar.gz
slackbuilds-eb54dd298a32662ab7cbfdd26cca9a78f9557218.tar.xz
academic/bowtie2: Updated for version 2.4.2.
Signed-off-by: Dave Woodfall <dave@slackbuilds.org> Signed-off-by: Willy Sudiarto Raharjo <willysr@slackbuilds.org>
Diffstat (limited to 'academic')
-rw-r--r--academic/bowtie2/bowtie2.SlackBuild6
-rw-r--r--academic/bowtie2/bowtie2.info6
2 files changed, 5 insertions, 7 deletions
diff --git a/academic/bowtie2/bowtie2.SlackBuild b/academic/bowtie2/bowtie2.SlackBuild
index 370b409bc0..fa8d2dfa04 100644
--- a/academic/bowtie2/bowtie2.SlackBuild
+++ b/academic/bowtie2/bowtie2.SlackBuild
@@ -25,7 +25,7 @@
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
PRGNAM=bowtie2
-VERSION=${VERSION:-2.4.1}
+VERSION=${VERSION:-2.4.2}
BUILD=${BUILD:-1}
TAG=${TAG:-_SBo}
@@ -72,8 +72,6 @@ find -L . \
-o -perm 440 -o -perm 400 \) -exec chmod 644 {} \;
#Use our FLAGS
-#sed -i "/RELEASE_FLAGS/s/=/+=/" Makefile
-
RELEASE_FLAGS+="$SLKCFLAGS" \
make
@@ -102,7 +100,7 @@ find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | gr
mkdir -p $PKG/usr/doc/$PRGNAM-$VERSION
cp -a \
- AUTHORS LICENSE MANUAL NEWS TUTORIAL VERSION doc \
+ AUTHORS LICENSE MANUAL NEWS TUTORIAL BOWTIE2_VERSION doc \
$PKG/usr/doc/$PRGNAM-$VERSION
cat $CWD/$PRGNAM.SlackBuild > $PKG/usr/doc/$PRGNAM-$VERSION/$PRGNAM.SlackBuild
diff --git a/academic/bowtie2/bowtie2.info b/academic/bowtie2/bowtie2.info
index 8c3fb45d87..c57cd185f3 100644
--- a/academic/bowtie2/bowtie2.info
+++ b/academic/bowtie2/bowtie2.info
@@ -1,8 +1,8 @@
PRGNAM="bowtie2"
-VERSION="2.4.1"
+VERSION="2.4.2"
HOMEPAGE="https://github.com/BenLangmead/bowtie2/releases"
-DOWNLOAD="https://github.com/BenLangmead/bowtie2/archive/v2.4.1/bowtie2-2.4.1.tar.gz"
-MD5SUM="5938482fab363c6356f9662cce38f99c"
+DOWNLOAD="https://github.com/BenLangmead/bowtie2/archive/v2.4.2/bowtie2-2.4.2.tar.gz"
+MD5SUM="d5f8674aed8bdbf6b96bd07f3df528ee"
DOWNLOAD_x86_64=""
MD5SUM_x86_64=""
REQUIRES="tbb python3"