diff options
Diffstat (limited to 'academic/genometools/genometools.SlackBuild')
| -rw-r--r-- | academic/genometools/genometools.SlackBuild | 39 |
1 files changed, 27 insertions, 12 deletions
diff --git a/academic/genometools/genometools.SlackBuild b/academic/genometools/genometools.SlackBuild index f4af4db0f9..47f6ca9adf 100644 --- a/academic/genometools/genometools.SlackBuild +++ b/academic/genometools/genometools.SlackBuild @@ -1,8 +1,8 @@ -#!/bin/sh +#!/bin/bash # Slackware build script for genometools -# Copyright 2014-2018 Petar Petrov slackalaxy@gmail.com +# Copyright 2014-2022 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -22,10 +22,13 @@ # OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF # ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +cd $(dirname $0) ; CWD=$(pwd) + PRGNAM=genometools -VERSION=${VERSION:-1.5.10} +VERSION=${VERSION:-1.6.2} BUILD=${BUILD:-1} TAG=${TAG:-_SBo} +PKGTYPE=${PKGTYPE:-tgz} if [ -z "$ARCH" ]; then case "$( uname -m )" in @@ -35,7 +38,14 @@ if [ -z "$ARCH" ]; then esac fi -CWD=$(pwd) +# If the variable PRINT_PACKAGE_NAME is set, then this script will report what +# the name of the created package would be, and then exit. This information +# could be useful to other scripts. +if [ ! -z "${PRINT_PACKAGE_NAME}" ]; then + echo "$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE" + exit 0 +fi + TMP=${TMP:-/tmp/SBo} PKG=$TMP/package-$PRGNAM OUTPUT=${OUTPUT:-/tmp} @@ -66,17 +76,26 @@ rm -rf $PRGNAM-$VERSION tar xvf $CWD/$PRGNAM-$VERSION.tar.gz cd $PRGNAM-$VERSION chown -R root:root . + +# This is a looping symlink that the 'find' step below complains about. +# The only thing that is used from this location is 'sam.h', so let's +# just make a proper folder and copy it there. +rm src/external/samtools-0.1.18/samtools +mkdir -p src/external/samtools-0.1.18/samtools +cp src/external/samtools-0.1.18/sam.h src/external/samtools-0.1.18/samtools + find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ -o -perm 511 \) -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; -# Fix library path +# Fix library and man pages path sed -i "s:lib/libgenometools:lib${LIBDIRSUFFIX}/libgenometools:g" Makefile sed -i "s:\$(prefix)/lib:\$(prefix)/lib${LIBDIRSUFFIX}:g" Makefile +sed -i "s:/share/man/:/man/:g" Makefile -CFLAGS="$SLKCFLAGS" \ +CFLAGS="$SLKCFLAGS -Wno-error=format-truncation=" \ CXXFLAGS="$SLKCFLAGS" \ make $BUILDARCH \ prefix=/usr @@ -90,10 +109,6 @@ cd gtpython python setup.py install --root=$PKG cd .. -# We don't need this -rm -rf $PKG/usr/bin/genometools-config -rm -rf $PKG/usr/lib${LIBDIRSUFFIX}/libgenometools.a - find $PKG -print0 | xargs -0 file | grep -e "executable" -e "shared object" | grep ELF \ | cut -f 1 -d : | xargs strip --strip-unneeded 2> /dev/null || true @@ -108,4 +123,4 @@ mkdir -p $PKG/install cat $CWD/slack-desc > $PKG/install/slack-desc cd $PKG -/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.${PKGTYPE:-tgz} +/sbin/makepkg -l y -c n $OUTPUT/$PRGNAM-$VERSION-$ARCH-$BUILD$TAG.$PKGTYPE |