diff options
Diffstat (limited to 'academic/genometools/genometools.SlackBuild')
| -rw-r--r-- | academic/genometools/genometools.SlackBuild | 15 |
1 files changed, 13 insertions, 2 deletions
diff --git a/academic/genometools/genometools.SlackBuild b/academic/genometools/genometools.SlackBuild index 6b3c0a762c..8fc7ba42b8 100644 --- a/academic/genometools/genometools.SlackBuild +++ b/academic/genometools/genometools.SlackBuild @@ -2,7 +2,7 @@ # Slackware build script for genometools -# Copyright 2014-2020 Petar Petrov slackalaxy@gmail.com +# Copyright 2014-2021 Petar Petrov slackalaxy@gmail.com # All rights reserved. # # Redistribution and use of this script, with or without modification, is @@ -66,11 +66,22 @@ rm -rf $PRGNAM-$VERSION tar xvf $CWD/$PRGNAM-$VERSION.tar.gz cd $PRGNAM-$VERSION chown -R root:root . + +# This is a looping symlink that the 'find' step below complains about. +# The only thing that is used from this location is 'sam.h', so let's +# just make a proper folder and copy it there. +rm src/external/samtools-0.1.18/samtools +mkdir -p src/external/samtools-0.1.18/samtools +cp src/external/samtools-0.1.18/sam.h src/external/samtools-0.1.18/samtools + find -L . \ \( -perm 777 -o -perm 775 -o -perm 750 -o -perm 711 -o -perm 555 \ -o -perm 511 \) -exec chmod 755 {} \; -o \ \( -perm 666 -o -perm 664 -o -perm 640 -o -perm 600 -o -perm 444 \ - -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + -o -perm 440 -o -perm 400 \) -exec chmod 644 {} \; + +# Thanks Debian for the patch +patch -p1 -i $CWD/gcc10.patch # Fix library and man pages path sed -i "s:lib/libgenometools:lib${LIBDIRSUFFIX}/libgenometools:g" Makefile |